Mus pahari (shrew mouse): 110329620
Help
Entry
110329620 CDS
T05929
Symbol
Ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah04612
Antigen processing and presentation
mpah05145
Toxoplasmosis
mpah05152
Tuberculosis
mpah05164
Influenza A
mpah05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
110329620 (Ciita)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
110329620 (Ciita)
09171 Infectious disease: bacterial
05152 Tuberculosis
110329620 (Ciita)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
110329620 (Ciita)
09163 Immune disease
05340 Primary immunodeficiency
110329620 (Ciita)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
mpah01001
]
110329620 (Ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
mpah04054
]
110329620 (Ciita)
Enzymes [BR:
mpah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
110329620 (Ciita)
Protein kinases [BR:
mpah01001
]
Serine/threonine kinases: Other
TAF1 family
110329620 (Ciita)
Pattern recognition receptors [BR:
mpah04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
110329620 (Ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_14
LRR_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
110329620
NCBI-ProteinID:
XP_021065023
Ensembl:
MGP_PahariEiJ_G0016151
LinkDB
All DBs
Position
12:6550150..6596607
Genome browser
AA seq
1156 aa
AA seq
DB search
MNHFQAILTQVQTLLSSQKPRQVRALLDGLLEEELLSREYHCALLHEPDGDALARKISLT
LLEKGDLDLTFLSWVCNSLQAPTVERGTSYRDHGGHSLCATMELGSPEGSYLELLNSDAD
PLHLYHLHDQMDLAGEEEIELSSEPDTDTINCDQFSKLLQDMEMDEETREAYANIAELDQ
YVFQDTQLEGLSKDLFIEHIGAEEGFGENIEIPVEAGQKPQKRRFPEEHAMDSKHRKLAP
TSRTSLNYLDLPTGHIQIFTTLPQGLWQISGAGTGLSSVLIYRGEMPQVNQILPSSNPTI
LTLPQSPDRPGSTSPFTPSAADLPSMPEPALTSRVNETEDTTSPSPCQEGPESSIELPKW
PEAVERFQHSLQDKYKALPESPSGPLVAVQLVRARLERGSNKSQERELATPDWTERQLAH
GGLAEVLQVVGDCRRPRETQVVAVLGKAGQGKSHWARTVSHTWACGQLLQYDFVFYVPCH
CLDRPGDTYHLRDLLCPPSLQPLAMDDEVFDYIVRQPDRVLLILDAFEELEAQDSLLHGP
CGPLSPEPRSLRGLLAGIFQRKLLRGCTLLLTARPRGRLAQSLSKADAIFEVPSFSTKQA
QTYMRHYFENSGTAGNQDKALGLLEGQPLLLSYSHSPVLCRSVCQLSKALLEQGTEAQLP
CTLTGLYVGLLGPAARNSPPGALVELAKLAWELGRRHQSTLQETQFSSVEVKTWAVTQGL
MQQTLGTTEAQLAFSSFLLQCFLGAVWLAQCNEIKDKELPQYLALTPRKKRPYDNWLEGV
PRFLAGLVFQPRAHCLGALVEPAVAAVADRKQKVLTRYLKRLKLGTLRAGRLLELLHCAH
ESQEPGIWEHVAHQLPGHLSFLGTRLTPPDVYVLGRALETASQDFSLDLRQTGIEPSGLG
NLVGLSCVTSFRASLSDTMALWESLQQQGEAQLLQAAEEKFTIEPFKVKSPKDVEDLDRL
VQTQRLRNPSEDAAKDLPAVRDLKKLEFALGPVLGPQAFPTLAKILPAFSSLQHLDLDSL
SENKIGDKGVSKLSATFPQLKALETLNLSQNSITDVGACKLAEALPALAKSLLRLSLYNN
CICDKGAKSLAQVLPDMVSLRVMDVQFNKFTAAGAQQLASSLQKCPQVETLAMWTPTIPF
GVQEHLQHLDARISLR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacttccaggccatcctgacccaggtacagacactgctctccagccagaagccc
aggcaggtgcgggccctcctggatggcctgctggaagaagagttgctctcacgggaatac
cactgtgccctgctccatgagcctgatggtgatgctctggcccggaagatttccctgacc
ctgctggagaaaggggacttagacttgactttcttgagctgggtctgcaacagtctgcag
gctcccacggtagagaggggcaccagctacagggaccatggaggccatagtctgtgtgcc
accatggaactggggtctccagagggcagctacctggagctccttaacagtgatgccgac
cccctacatctctatcacctccatgaccagatggacctggccggggaggaggagatcgaa
ctcagctcagagccagacacagacaccatcaactgcgaccagttcagcaagctgctgcag
gacatggaaatggatgaagagacccgagaggcctatgccaacattgcggaactggatcag
tacgtgttccaggatacccagctggagggcctgagcaaggacctcttcatagagcacatc
ggagcagaagaaggctttggtgagaacatagagatccctgtggaagcaggacagaaacct
cagaagagacgcttcccagaagagcatgctatggactcaaagcacaggaagctagcgccc
acctctaggacctcactgaactatttggatctccccactgggcacatccagatcttcacc
actctgccccagggactctggcaaatctccggggctggcacagggctctccagtgtccta
atctaccgcggtgagatgccccaggtcaaccaaatactcccttcaagcaaccccactatc
ctcactctcccccagtccccagaccggcctggctccaccagccccttcacaccctctgca
gctgacctgcccagcatgcccgaacctgcgctgacctcccgcgtaaatgagacagaggac
acaacatctccctccccatgccaagagggtcccgagtcttccatcgagcttccaaaatgg
ccagaggctgtggagcgattccagcactccctacaggacaaatacaaggcgttgcccgag
agcccaagtgggcctctggtggccgtgcagctggtacgggccaggctggaaagaggcagc
aacaagagccaggaaagggagctggccactcccgactggacagagcgccagctagcccac
ggtggtctggcagaggtacttcaggttgtcggtgactgcaggcgaccacgagagacacag
gtggtcgctgtgctgggcaaggctggccagggcaagagccactgggccaggacagtgagc
cacacctgggcatgtggccagttgctacaatatgactttgtcttctatgtcccctgtcat
tgcttggatcgtcccggggacacctaccacctgcgggatctgctctgtcccccgagcctg
cagccactggccatggatgacgaggtctttgattatatagtgaggcagccagaccgtgtc
ctgctcattctagatgcttttgaggagctagaggcccaagacagcctcctgcacggaccc
tgtggacctctgtccccagagccccgctccctccggggactgctggctggcatcttccag
cggaaactgctgcgaggctgcacgctgctcctcacagcccggccccggggccgcctggct
cagagcctgagcaaggcagatgccatctttgaggtgcccagcttctctaccaagcaggcc
cagacttacatgaggcactactttgagaactcggggacagcggggaaccaagacaaggcc
ctgggcctcctggagggccagcctcttctcctcagctatagtcacagccctgttctgtgc
aggtctgtgtgccaactctccaaggccctgctggaacagggcacagaggcccagctacct
tgtacacttaccggactctatgtgggcctgctaggccctgcagctcggaacagtcctccc
ggagccttagttgagctggccaagctggcctgggagctgggacgaagacaccaaagcacc
ttgcaagagacccagttttcatcagtggaggtgaagacctgggcagtgacgcaaggcttg
atgcagcagaccctggggaccacagaggctcaactggccttctccagttttctgctacag
tgtttcctgggtgctgtgtggctggcacagtgcaatgaaatcaaagacaaggagctgcca
cagtacctggccttgacaccaaggaagaagaggccctatgacaactggctggagggtgta
ccacgctttctggctggattagttttccagcctagagcccactgcctgggagctctggtg
gagcctgcggtagctgcagtggcggataggaaacaaaaggttcttaccaggtacctgaag
cgcctgaagctggggacgctccgggcagggaggttgctggagctgctccactgtgcccac
gagtcacaggaacctgggatttgggagcatgttgcacaccagctccctgggcacctctcc
ttcctgggcacccggctcacacccccagatgtgtacgtgctgggcagggccttggagaca
gccagccaggacttctccttggaccttcgtcagactggcattgagccctctggactggga
aacctcgtgggactcagctgtgtcaccagtttcagggcctccttgagtgatacaatggca
ttatgggagtcccttcagcaacagggagaagcccagctactccaagcagcagaggagaag
ttcaccattgagccatttaaagtcaaatcccccaaggacgtggaagacctggaccgcctc
gtgcagacccagaggctgagaaacccctcagaagatgcagctaaggatcttcctgccgtc
cgggaccttaagaagctagagtttgcgttgggccccgtcttgggcccccaggctttcccc
actctggcaaagatccttccagccttctcttccctgcagcacctggacctggactcactt
agtgagaacaagatcggagacaagggtgtgtcgaagctctcagccaccttccctcagctg
aaggccctggagacgctcaacttgtcccaaaacagcatcactgatgtgggtgcctgcaag
cttgcagaagctctgccggccctagccaagtccctcctaaggctgagcttgtacaataac
tgcatctgtgacaaaggagccaagagcctggcacaagtacttccagacatggtgtccctg
cgggtgatggatgtccagttcaacaagttcacagctgccggtgcccagcagctggcctcc
agccttcagaagtgccctcaggtggaaacactggcaatgtggacacccactatccccttt
ggggttcaggaacacctgcagcatctggatgccaggatcagtctgagatga
DBGET
integrated database retrieval system
