Mus pahari (shrew mouse): 110330454
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Entry
110330454 CDS
T05929
Symbol
Cnot6l
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110330454 (Cnot6l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110330454 (Cnot6l)
Enzymes [BR:
mpah01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110330454 (Cnot6l)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110330454 (Cnot6l)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110330454 (Cnot6l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_1
Motif
Other DBs
NCBI-GeneID:
110330454
NCBI-ProteinID:
XP_021066222
Ensembl:
MGP_PahariEiJ_G0017207
LinkDB
All DBs
Position
13:complement(84618661..84701416)
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AA seq
550 aa
AA seq
DB search
MPKEKYDPPDPRRIYTIMSAEEVANGKKSHWAELEISGRVRSLSTSLWSLTHLTALHLND
NNLARIPPDIAKLHNLVYLDLSSNKLRSLPAELGNMVSLRELLLNDNYLRVLPYELGRLF
QLQTLGLTGNPLSQDIMSLYQDPDGTRKLLNFMLDNLAVHPEQLPPRPWITLKERDQILP
SASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNWDADIISLQEVETEQ
YFTLFLPALKDRGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQV
AMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGTGMKPIHAADKQLLIVANAHMHWDP
EYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSN
GGVADNHKDFKELRYNECLMNFSCSGKNGSSEGRITHGFQLKSAYENNLMPYTNYTFDFK
GVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLELHPPLLPL
VNGVHLPNRR
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaggaaaaatatgatcctccagatcctcgcagaatttacaccatcatgtccgca
gaggaggtagccaatgggaaaaaatctcactgggcagagttagagatttcaggtagagtg
cggagcttaagtacatcactctggtcattgacacacttgacagcactgcacctaaatgac
aataaccttgctcgcattccacctgatattgccaagcttcataatctggtttacctggat
ctgtcatccaataaactcagaagtttaccagcagagctaggaaacatggtgtctctcagg
gaattgcttttaaatgacaattatttacgggtgttgccttatgaacttggccggctcttc
cagctacaaactctaggtttaacaggcaatcctttatcacaggatattatgagcttatac
caggacccagatggaacccgaaagctactgaactttatgcttgacaatcttgcagttcat
ccagagcagcttcctccgaggccatggattacattaaaagaacgagaccaaattctgcca
tcagcatcattcacggttatgtgttacaatgtgttatgtgataaatatgctaccaggcag
ctatatggctattgtccatcctgggcattaaactgggaatacaggaaaaagggaataatg
gaagaaattgttaactgggacgcagatatcattagtcttcaggaagtggaaacagagcaa
tactttactctctttctgccagcattgaaggatcgtggatatgatggatttttttctcca
aagtcacgtgccaaaatcatgtctgagcaggaaagaaagcatgtggatggttgtgcaata
ttcttcaaaacagaaaaatttacattggtgcagaagcatacagtggaattcaaccaggta
gcaatggcaaattcagatggatccgaagcaatgctaaacagagtaatgacgaaagataac
attggcgttgctgtggtgttagaggttcacaaggagctctttggaacaggtatgaagcct
attcatgctgcagacaaacagctgcttatagtggcaaatgcccacatgcattgggaccca
gagtattctgatgtgaaacttattcagaccatgatgtttgtctcagaggttaaaaacatt
ctggagaaagcctcaagtaggcctggcagcccaactgcagatcccaattccatcccgctg
gtgctatgtgcagatcttaactcattgccagattcaggtgttgtggaatatttaagcaat
ggtggagtagctgacaaccataaagacttcaaggaactaaggtacaatgagtgtcttatg
aacttcagctgtagtggaaagaatggaagctcagaagggagaatcacacatggcttccaa
cttaagagcgcctatgaaaataacttgatgccttataccaattacacctttgatttcaaa
ggtgtgattgactacattttctattccaagactcatatgaacgtgcttggtgtcctgggg
cctttagatcctcaatggctggttgagaacaacatcactgggtgtccacaccctcacatc
ccttcagaccacttctcactgttaacacaacttgaactccaccctccactcctgcctctt
gtcaatggtgttcacttgcctaatcggaggtag
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