Mus pahari (shrew mouse): 110330941
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Entry
110330941 CDS
T05929
Symbol
Htt
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah05016
Huntington disease
mpah05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
110330941 (Htt)
05022 Pathways of neurodegeneration - multiple diseases
110330941 (Htt)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110330941 (Htt)
04131 Membrane trafficking [BR:
mpah04131
]
110330941 (Htt)
03029 Mitochondrial biogenesis [BR:
mpah03029
]
110330941 (Htt)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110330941 (Htt)
Membrane trafficking [BR:
mpah04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
110330941 (Htt)
Mitochondrial biogenesis [BR:
mpah03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
110330941 (Htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_EF3_N
Death_3
Motif
Other DBs
NCBI-GeneID:
110330941
NCBI-ProteinID:
XP_021066914
Ensembl:
MGP_PahariEiJ_G0016923
LinkDB
All DBs
Position
13:28191117..28326666
Genome browser
AA seq
3122 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQTPPQAPPPPPPPPPPPPQPPQPPPQGQPPPPPPPLP
GPAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSLRNSPEFQKLLGIAMELFLLCSDD
AESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWRFAELAHLVR
PQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIKVLLKAFIAN
LKSSSPTVRRTAAGSAVSICQHSRRTQYFYNWLLNVLLGLLVPMEEEHSTLLILGVLLTL
RCLVPLLQQQVKDTSLKGSFGVTRKEMEVSPSTEQLVQVYELTLLHTQHQDHNVVTGALE
LLQQLFRTPPPELLQALTTPGGLGQLTLVQEEAQGRGRSGSIVELLAGGGSSCSPVLSRK
QKGKVLLGEEEALEDDSESRSDVSSSAFAASVKSEIGGELAASSGVSTPGSVGHDIITEQ
PRSQHTLQADSVDLSGCDLTSAATDGDEEDILSHSSSQFSAVPSDPAMDLNDGTQASSPI
SDSSQTTTEGPDSAVTPSDSSEIVLDGADSQYLGMQIGQPQEEDEEEAAGVLSGEVSDVF
RNSSLALQQAHLLERMGHSRQPSDSSIDKFVSRDEVAEASDPESKPCRIKGDIGEPNDDD
SAPLVHCVRLLSASFLLTGEKKALVPDRDVRVSVKALALSCIGAAVALHPESFFSRLYKV
PLNATESTEEQYVSDILNYIDHGDPQVRGATAILCGTLVYSILSRSRLRVGDWLGNIRTM
TGNTFSLVDCIPLLQKTLKDESSVTCKLACTAVRHCVLSLCSSSYSDLGLQLLIDMLPLK
NSSYWLVRTELLETLAEIDFRLVSFLEAKAESLHRGAHHYTGFLKLQERVLNNVVIYLLG
DEDPRVRHVAATSLTRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHETQPPSHFSV
STITRIYRGYSLLPSITDVTLENNLSRVVAAVSHELITSTTRALTFGCCEALCLLSAAFP
VCTWSLGWHCGVPPLSASDESRKSCTVGMASMILTLLSSAWFPLDLSAHQDALILAGNLL
AASAPKSLRSSWTSEEEANSAATRQEEIWPALGDRTLVPMVEQLFSHLLKVINICAHVLD
DVTPGPAIKAALPSLTNPPSLSPIRRKGKEKEPVEQASTPMSPKKVGEASAASRQSDTSG
PVTASKSSSLGSFYHLPSYLKLHDVLKATHANYKVTLDLQNSTEKFGGFLRSALDVLSQI
LELATLQDIGKCVEEVLGYLKSCFSREPMMATVCVQQLLKTLFGTNLASQFDGLSSNPSK
SQCRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEHDASGWFDVLQKV
SAQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQKQVLDLLAQLVQ
LRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQIIGI
PKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKEVVVSMLLR
LIQYHQVLEMFILVLQQCHKENEDKWKRLSRQVADIILPMLAKQQMHIDSHEALGVLNTL
FEILAPSSLRPVDMLLRSMFITPSTMASVSTVQLWISGILAILRVLISQSTEDIVLCRIQ
ELSFSPHLLSCPVINRLRGGGSNGTLGECSEGKQKSLPEDTFSRFLLQLVGILLEDIVTK
QLKVDMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATRLFTSDGCEGSFYTLDSL
NARVRSMVPTHPALVLLWCQILLLINHTDHRWWAEVQQTPKRHSLSCTKSLNPQMSGEEE
DSGSAAQLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHVQDLISLSHEPPVQD
FISAIHRNSAASGLFIQAIQSRCENLSTPTTLKKTLQCLEGIHLSQSGAVLTLYVDRLLG
TPFRALARMVDTLACRRVEMLLAANLQSSMAQLPEEELNRIQEHLQNSGLAQRHQRLYSL
LDRFRLSTVQDSLSPLPPVTSHPLDGDRHTFLETVSPDKDWYLQLVRSQCWTRSDSALLE
GAELVNRIPAEDMNDFMMSSEFNLSLLAPCLSLGMSEIANGQKSPLFEAARGVTLDRVTS
VVQQLPAVHQVFQPFLPIEPTAYWSKLNDLLGDTTSYQSLTILARALAQYLVVLSKVPAH
LHLPSEKEGDTVKFVVMTLEALSWHLIHEQIPLSLDLQAGLDCCCLALQVPGLWGVLSSP
EYVTHACSLIHCVRFILEAIAVQPGDQLLGPESRSRTPRAVRKEEADSDMQNLSHVTSAC
EMVADMVESLQSVLALGHKRNSTLPSFLTAVLKNIVISLARLPLVNSYTRVPPLVWKLGW
SPKPGGDFGTVFPEIPVEFLQEKEILKEFIYRINTLGWTSRTQFEETWATLLGVLVTQPL
VMEQEESPPEEDTERTQIHVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQPRNKPLKALD
TRFGRKLSMIRGIVEQEIQEMVSQRENTATHHSHQAWDPVPSLLPATTGALISHDKLLLQ
INPEREPGNMSYKLGQVSIHSVWLGNNITPLREEEWDEEEEEETDVPAPTSPPVSPVNSR
KHRAGVDIHSCSQFLLELYSRWILPSSAARRTPVILISEVVRSLLVVSDLFTERTQFEMM
YLTLTELRRVHPSEDEILIQYLVPATCKAAAVLGMDKTVAEPVSRLLESTLRSSHLPSQI
GALHGILYVLECDLLDDTAKQLIPVVSDYLLSNLKGIAHCVNIHSQQHVLVMCATAFYLM
ENYPLDVGPEFSASVIQMCGVMLSGSEESTPSIIYHCALRGLERLLLSEQLSRLDTESLV
KLSVDRVNVQSPHRAMAALGLMLTCMYTGKEKASPGRASDPSPATPDSESVIVAMERVSV
LFDRIRKGFPCEARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVF
QTLHSAGQSSMVRDWVMLSLSNFTQRTPVAMAMWSLSCFLVSASTSPWVSAILPHVISRM
GKLEQVDVNLFCLVATDFYRHQIEEEFDRRAFQSVFEVVAAPGSPYHRLLACLQNVHKVT
TC
NT seq
9369 nt
NT seq
+upstream
nt +downstream
nt
atggcaaccctggaaaagctgatgaaggctttcgagtcgctcaagtcgttccagcagcaa
cagcagcagcagacgccgccgcaggcgccgccgccaccaccaccgccgccgccgccgccg
cctcaaccccctcagccgccgcctcaggggcagccgccgccgccgccaccgccgctgcca
ggtccggccgaggaaccgctgcatcgaccaaagaaggaactctcagccaccaagaaggac
cgtgtgaatcattgtctaacaatatgtgagaacatcgtggcacagtctctcagaaattct
ccggaatttcagaaactcttgggcatcgctatggaactgtttctgctgtgcagtgacgat
gcggagtcagatgtcagaatggtggctgatgagtgcctcaacaaagtcatcaaagctttg
atggattctaatcttccaaggctacaattagaactctataaggaaattaaaaagaatggt
gctcctcgaagtttgcgtgcagccctgtggaggtttgctgagctggctcacctggttcga
cctcagaagtgtaggccttacctggtgaatcttcttccatgcctgacccgaacaagcaaa
agaccggaggaatcagttcaggagactttggctgcagctgttcctaaaattatggcttct
tttggcaatttcgcaaatgacaatgaaattaaggttctgttgaaagctttcatagcaaat
ctgaagtcaagctctcccactgtgcggcgcacagcagcaggctcagccgtgagcatctgc
caacattctaggaggacacagtacttctataactggctcctgaatgtcctcctaggtctg
ctggttcccatggaggaagagcactccactctcctgatcctcggtgtgttgctcacattg
aggtgtctagtgcccttactccagcagcaggtcaaggacacaagtctaaaaggcagcttt
ggggtgacacgaaaagaaatggaagtctctccttccacagagcagcttgtccaggtttat
gaactgactttgcttcacactcagcaccaagaccacaatgtggtgacaggtgcactggag
ctcctgcagcagctcttccgcacccctccaccagagctcctgcaagcactgaccacacca
ggaggtcttgggcagctcactctggttcaagaagaggcccagggccgaggccgcagcggg
agcattgtggagcttttagctggagggggttcctcatgcagccctgtcctctcaagaaag
caaaaaggcaaagtgctcttaggagaggaagaagccttggaagatgactcggagtccagg
tcagatgtgagcagctcagcctttgcagcctctgtgaagagtgagattggtggagagctc
gctgcttcttcaggtgtttccactcctggttctgttggtcacgacatcatcactgagcag
cctcgatctcaacacacacttcaagcagactctgtggatttgtccggctgtgacctgacc
agtgctgctactgatggggatgaggaagacatcttgagccacagctccagtcagttcagt
gctgtcccatctgaccctgccatggacctgaatgatgggacccaggcctcctcacccatc
agtgacagttctcagaccaccactgaaggacctgattcagctgtgactccttctgacagt
tctgaaattgtgttagatggtgccgatagccagtacttaggcatgcagataggacagcca
caggaggaagatgaggaggaagctgcaggtgttctttctggtgaagtctcagatgttttc
agaaactcttctctggcccttcaacaggcacacttgttggaaagaatgggccatagcagg
cagccttccgacagcagtatagataagtttgtatcaagagatgaggttgctgaagccagt
gacccagaaagcaagccttgccgaatcaaaggtgacataggagagcctaatgatgatgat
tctgctcctctggtgcattgtgtccgtcttttatctgcttcctttttgttaactggtgaa
aagaaagcactggttccagacagagatgtgagagtcagtgtgaaggccctggccctcagc
tgtattggtgcagctgtggcccttcatccagagtcgttcttcagcagactgtacaaagta
cctcttaatgccacggaaagtactgaggagcagtatgtctctgacatcttgaactacatc
gatcatggagacccacaggtccgaggagccactgccattctctgtgggacccttgtctac
tccatcctcagtaggtcccgtctccgtgttggtgactggctgggtaacatcagaaccatg
acaggaaatacattttctctggtggactgcattcctttactgcagaaaactttgaaggat
gaatcttctgttacttgcaagttggcttgtacagctgtgaggcactgtgtcctgagtctt
tgcagcagcagctatagtgacttgggattgcagctacttatcgatatgctgcctctgaag
aacagctcctactggctggtgaggactgaactgctggaaactctggcagagatcgacttc
aggctggtgagttttttggaggcaaaagcagaaagtttacaccgaggggctcatcattat
acagggtttctaaaactacaagaacgagtactcaataatgtggtcatttatttgcttgga
gatgaagaccccagggttcgacatgttgctgcaacatcattaacaaggcttgtcccaaag
ctgttttacaagtgtgaccaaggacaagctgatccggtggtggctgtagcgagggatcaa
agcagtgtttacctgaagcttctcatgcatgagactcagccaccgtcacacttctccgtc
agcaccataaccagaatctatagaggctatagcttactgccaagtataacagatgtcacc
ctggaaaacaacctctcaagagttgttgctgcagtttctcatgaactcattacgtcaaca
acacgggcactcacatttggatgctgtgaagccttgtgtcttctttcagcggcctttcca
gtttgcacttggagtttaggatggcactgtggagtgcccccactgagtgcctctgatgag
tccaggaagagctgcactgttgggatggcctccatgattctcaccttgctttcatcagct
tggttcccactggatctctcagcccatcaggatgccttgattttggctggaaacttgcta
gcagcgagtgcccccaagtctctgagaagttcatggacctctgaagaagaagctaactca
gcagccaccagacaggaggaaatctggcctgctctgggggatcggacgctagtgcccatg
gtggagcaacttttctcccacctgctgaaggtgatcaatatctgtgctcatgtcttggac
gatgtgactcctggaccagcaatcaaggcagccttgccttctctaacaaaccccccttct
ctaagtcctattcgacggaaagggaaggagaaagaacctgtagaacaagcttctactccg
atgagtcccaagaaagttggtgaagccagtgcagcctctcgacaatcagacacctcagga
cctgtcacagcaagtaaatcatcttcactggggagtttctaccatctcccctcctacctc
aaactgcatgatgtcctgaaagccactcacgccaactataaggtcaccttagatcttcag
aacagcactgaaaagtttggggggttcctgcgctctgccttggacgtcctttctcagatt
ctagagctggcgacactgcaggacattggaaagtgtgttgaagaggtccttggatacctg
aaatcctgctttagtcgagaaccaatgatggcaactgtctgtgtgcagcagctattgaag
actctctttggaacaaacttagcctcacagtttgatggcttatcttccaaccccagcaag
tctcagtgccgagcacagcgccttggctcttccagtgtgaggcccggcttatatcactac
tgcttcatggcaccgtacacgcacttcacacaggctttggctgatgccagcctgaggaac
atggtgcaagcggagcaggagcatgatgcctcggggtggtttgatgtactccagaaagtg
tctgctcaattgaagacgaacctaacaagcgtcacaaagaaccgtgcagataagaatgct
attcataaccacattaggctatttgagcctcttgttataaaagcattgaagcagtacacc
acgacaacatctgtacagttgcagaagcaggttttggatttgctggcacagctggttcag
ttacgggtcaattactgtctactggattcagaccaggtgttcatcgggtttgtactgaag
cagtttgagtacattgaagtgggccagttcagggaatcagaggcaattattccaaatata
tttttcttcctggtattactgtcttatgagcgctaccattcaaaacagatcattgggatt
cctaagatcatccagctgtgtgatggcatcatggccagtggaaggaaggctgttacacac
gctatacctgctctgcagcccattgtccatgacctcttcgtgttacgaggaacaaataaa
gctgatgcagggaaagagcttgagacccagaaggaggtggtggtctccatgctgttacga
ctcatccagtaccatcaggtgctggagatgttcatccttgtcctgcagcagtgccacaag
gagaatgaggacaagtggaaacggctctctcggcaggtcgcagacatcatcctgcccatg
ttggccaagcagcagatgcatattgactctcatgaagccctcggagtgttaaataccttg
tttgagattctggctccttcctccctacgtcctgtggacatgcttttgcggagtatgttc
atcactccaagcacaatggcatctgtaagcactgtgcagctgtggatatctggaatcctt
gccattctgagggttctcatttcccagtcgactgaggacattgttctttgtcgcatccag
gagctctccttctctccacacttgctctcctgtccagtgattaacaggttaaggggtgga
ggcagtaacggaacactaggagaatgcagcgaaggaaaacaaaagagtttgccagaagat
acattctcaaggtttcttttacagctggttggtattcttctagaagacattgttacaaaa
cagctcaaagtggacatgagtgaacagcagcatacattctactgccaagagctaggcaca
ctgctcatgtgtctgattcacatattcaaatctggaatgttccggagaatcacagcagct
gccactagactcttcaccagtgatggctgtgaaggcagcttctatactctagatagcctg
aatgcacgggtgcgatccatggtgcccacacacccagccctggtactgctctggtgtcag
atcctactgctcatcaaccacactgaccaccggtggtgggcagaggtgcagcagacaccc
aagagacacagtctgtcctgcacaaagtcacttaacccccagatgtctggcgaagaggag
gattctggctcagcagctcagcttggaatgtgcaatagagaaatagtgcgaagaggggcc
cttattctcttctgtgattatgtctgtcagaatctccatgactcagaacacttaacatgg
ctcattgtgaatcacgttcaagatctgatcagcttgtctcatgagcctccagtacaagac
tttattagtgccattcatcgtaattctgcagctagtggtctttttatccaggcaattcag
tctcgctgtgaaaatctttcgactccaaccactctgaagaaaacacttcagtgcttggaa
ggcatccatctcagccagtctggcgctgtgctcacgctctatgtggacaggctcctgggc
acccccttccgtgcgctggctcgcatggtcgacaccctggcctgtcgccgggtagaaatg
cttttggctgcaaatttacagagcagcatggcccaattgccagaggaggaactaaacaga
atccaagaacacctccagaacagtgggcttgcacaaagacaccaaagactctattcactg
ctggacagattccgactttctaccgtgcaggactcacttagccccttgcccccagtcact
tcccacccactggatggggataggcacacatttctggaaacagtgagtccagacaaagac
tggtacctccagcttgtcagatcccagtgttggaccagatcagattctgcactgctggaa
ggtgcagagctggtgaatcgtatccctgctgaagatatgaatgacttcatgatgagctcg
gagttcaacctaagccttttggctccctgtttaagccttggcatgagtgagattgctaat
ggtcaaaagagtcccctctttgaagcagcccgtggggtgactctggaccgggtgaccagt
gttgttcagcagcttcctgctgtccatcaagtcttccagcctttcctgcctatagagccc
acagcctactggagcaagttgaatgatctgcttggtgataccacatcataccagtctctg
accatacttgcccgtgccctggcacagtacctggtggtgctctccaaagtgcctgctcat
ttgcaccttccttctgagaaggagggggacacggtgaagtttgtggtaatgacacttgag
gccctctcatggcatttgatccatgagcagatcccactgagtctggacctccaagccggg
ctagactgctgctgcctggcactacaggtgcctggcctctggggggtgctgtcctcccca
gagtacgtgactcatgcctgctccctcatccattgtgtgcgattcatcctggaagccatt
gcagtacaacctggagaccagcttctcggccctgaaagcaggtcacgtactccaagagct
gtcagaaaggaggaagccgactcagatatgcaaaacctcagtcacgtcacttcggcctgc
gagatggtggcagacatggtggaatccctgcagtcagtgctggccttgggccacaagagg
aacagcaccctgccttcatttctcacagctgtgctgaaaaacattgttatcagtctggcc
cgcctccccctagttaacagctatactcgtgtgcctcctctggtatggaaactcgggtgg
tcacccaagcctggaggggattttggcacagtgtttcctgagatccctgtagagttcctc
caggagaaggagatcctcaaggagttcatctaccgcatcaacaccctagggtggaccagt
cgtacccaattcgaagaaacttgggccaccctccttggtgtcctggtgactcagcccctg
gtgatggaacaggaagagagcccaccagaggaagacacagaaagaacccagatccatgtc
ctggctgtgcaggccatcacctctctagtgctcagtgcaatgaccgtgcctgtggctggc
aatccagctgtaagctgcttggagcaacagccccggaataagccactgaaggctctcgat
accagatttggaagaaagctgagcatgatcagagggattgtagaacaagaaatccaagag
atggtttcccaaagagagaatactgccactcaccattctcaccaggcatgggatcctgtc
ccttctctgttaccagctactacaggtgctctcatcagccatgacaagctgctgctgcag
atcaacccagagcgggagccaggcaacatgagctacaagctgggccaggtgtccatacac
tccgtgtggctgggaaataacatcacacccctgagagaggaggaatgggatgaggaggag
gaggaggaaactgatgtccctgcaccaacgtcaccacctgtgtctccagtcaattccaga
aaacaccgtgctggggttgatattcactcctgttcgcagtttctgcttgaattgtacagc
cgatggatcctgccatccagtgcagccagaaggacccctgtcatcctgatcagtgaagtg
gttcgatctcttcttgtagtatcagacttgttcaccgaacgtacccagtttgaaatgatg
tatctgacgctgacagaactacggagagtgcacccttcagaagatgagatcctcattcag
tacctggtgcctgccacctgtaaagcagctgctgtccttggaatggacaaaactgtggca
gagccagtcagccggctcctggagagcacactgaggagcagccacctgcccagccagatc
ggagccctgcacggcatcctctatgtgttggagtgtgacctcttggatgacactgcaaag
cagctcatcccagttgttagtgactatctgctgtccaacctcaaaggaatagcccactgc
gtgaatattcacagccagcagcatgtgctggtaatgtgtgccactgctttctacctgatg
gaaaactaccctctggatgtgggaccagaattttcagcatctgtgatacagatgtgtgga
gtaatgctgtctggaagtgaggagtccaccccctccatcatttaccactgtgccctccgg
ggtctggagcggctcctgctgtctgagcagctctctcggctagacacggagtccttggtc
aagctaagtgtggacagagtgaatgtacaaagcccacacagggccatggcagccctgggc
ctgatgcttacctgtatgtacacaggtaaggaaaaagccagtccaggcagagcttctgac
cccagccctgctacacctgacagcgagtctgtgatcgtagctatggagcgagtgtctgtt
ctctttgataggatccgcaagggatttccctgtgaagccagggtcgtggcaaggatcctg
cctcagttcctagatgacttctttccacctcaagatgtcatgaacaaagtcattggagag
ttcctgtccaatcagcagccatacccacagttcatggccactgtagtttacaaggttttt
cagactctgcacagtgctgggcagtcatccatggtccgagactgggtcatgctgtccctg
tccaacttcacacaaagaactccagttgccatggccatgtggagcctctcctgcttcctt
gtcagcgcatctaccagcccatgggtttctgcgatccttccacatgtcatcagcaggatg
ggcaaactggaacaggtggatgtgaaccttttctgcctggttgccacagacttctacaga
caccagatagaggaggaatttgaccgcagggctttccagtctgtgtttgaggtggtggca
gcaccaggaagtccataccacagactgcttgcttgtttgcaaaatgttcacaaggtcacc
acctgctga
DBGET
integrated database retrieval system
