Mus pahari (shrew mouse): 110332007
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Entry
110332007 CDS
T05929
Symbol
Vldlr
Name
(RefSeq) very low-density lipoprotein receptor
KO
K20053
very low-density lipoprotein receptor
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah05017
Spinocerebellar ataxia
mpah05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
110332007 (Vldlr)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
110332007 (Vldlr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mpah04131
]
110332007 (Vldlr)
Membrane trafficking [BR:
mpah04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
110332007 (Vldlr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
EGF
EGF_LRP2
hEGF
SGL
Motif
Other DBs
NCBI-GeneID:
110332007
NCBI-ProteinID:
XP_021068623
Ensembl:
MGP_PahariEiJ_G0014336
LinkDB
All DBs
Position
1:138760383..138797082
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AA seq
800 aa
AA seq
DB search
MGTSARWALWLLLALCWAPRDSGATASGKKAKCDSSQFQCTNGRCITLLWKCDGDEDCAD
GSDEKNCVKKTCAESDFVCKNGQCVPNRWQCDGDPDCEDGSDESPEQCHMRTCRINEISC
GARSTQCIPVSWRCDGENDCDNGEDEENCGNITCSADEFTCSSGRCVSRNFVCNGQDDCD
DGSDELDCAPPTCGAHEFQCSTSSCIPLSWVCDDDADCSDQSDESLEQCGRQPVIHTKCP
TSEIQCGSGECIHKKWRCDGDPDCKDGSDEVNCPSRTCRPDQFECEDGSCIHGSRQCNGI
RDCVDGSDEVNCKNVNQCLGPGKFKCRSGECIDISKVCDQEQDCRDWSDEPLKECHINEC
LVNNGGCSHICKDLVIGYECDCAAGFELIDRKTCGDIDECQNPGICSQICINLKGGYKCE
CSRGYQMDLATGVCKAVGKEPSLVFTNRRDIRKIGLERKEYIQLVEQLRNTVALDADIAA
QKLFWADLSQKAIFSFVYWSDWGEPAKIEKAGMNGFDRRPLVTEDIQWPNGITLDLVKSR
LYWLDSKLHMLSSVDLNGQDRRIVLKSLEFLAHPLALTIFEDRVYWIDGENEAVYGANKF
TGSELATLVNNLNDAQDIIVYHELVQPSGKNWCEDEMENGGCEYLCLPAPQINDHSPKYT
CSCPNGYNLEENGRECQSTSTPVTYSETKDINTTDILRTSGLVPGGINVTTAVSEVSVPP
KGTSAAWAILPLLLLVMAAVGGYLMWRNWQHKNMKSMNFDNPVYLKTTEEDLSIDIGRHS
ASVGHTYPAISVVSTDDDLA
NT seq
2403 nt
NT seq
+upstream
nt +downstream
nt
atgggcacgtccgcgcgctgggcgctgtggctgctgctcgcgctgtgctgggcgccccgg
gacagcggcgccactgcaagcgggaagaaagccaaatgtgatagctcccaattccagtgc
acaaatggccgctgcattaccctgctgtggaaatgtgatggagatgaagactgtgcggac
ggcagcgatgagaagaactgcgtaaagaagacgtgtgctgagtctgacttcgtgtgcaaa
aacggccagtgtgttcctaacagatggcagtgtgatggggatcctgattgcgaagacggt
tctgacgaaagcccagaacagtgccatatgagaacatgccgcataaatgaaatcagctgt
ggcgcccgttctactcagtgtatccccgtgtcctggagatgcgatggtgaaaatgattgt
gacaatggagaagatgaagaaaactgtggcaacataacgtgtagtgcagatgagttcact
tgctccagtggccgctgtgtctccaggaactttgtgtgcaatggccaggatgactgtgac
gatggcagtgatgagctggactgcgctccaccaacctgcggcgcccatgagttccagtgc
agcacctcttcctgcattcccctcagctgggtgtgtgatgacgacgcagactgttccgac
caatcagacgagtctcttgagcagtgtggccgtcagcctgtgatacacaccaaatgtccc
accagtgagatccagtgtggctctggcgagtgcattcacaaaaaatggcggtgtgacgga
gaccctgactgcaaggacggcagcgatgaggtcaactgtccttctcggacctgcagacct
gaccagtttgaatgtgaagacggtagctgtatccacggcagcaggcaatgcaatggcatc
cgagactgtgttgatggctctgatgaagtcaactgcaaaaacgtcaatcagtgcctgggc
cctggaaagttcaagtgcagaagcggggaatgcatagacatcagcaaagtatgtgaccag
gaacaagactgcagagactggagtgacgagcccttgaaggaatgccatatcaacgaatgc
ttggtcaataacggtggctgttcccatatctgcaaagacctagttataggctatgagtgt
gactgtgcggctgggtttgaactgatagataggaaaacctgtggagatattgatgaatgc
caaaacccgggaatctgcagtcaaatttgtatcaacttaaaaggcggttacaagtgtgaa
tgtagtcgtggctatcaaatggatcttgccactggcgtgtgcaaggcagtaggcaaagag
cccagtctggtcttcacgaatcgaagagacatcaggaagattggcctggagagaaaggag
tatatccaacttgtagaacaactaagaaacacggtggctctcgatgctgacattgcagca
cagaagctattttgggctgatctaagccagaaggccatcttcagctttgtgtattggtca
gactggggtgagccagctaaaatagaaaaagcaggaatgaatggatttgatagacgtcct
ctagtgacggaggacatccaatggcctaatggaattacactcgaccttgtcaaaagtcgc
ctctactggctggattccaagttgcacatgctctctagtgtggacctgaatggtcaagat
cgtaggatagtgctcaagtctctggagttcctagctcatcctcttgcactcaccatattt
gaggaccgcgtctactggatagatggagaaaatgaagcagtgtacggtgccaataaattc
actgggtcagagctggccactctagtgaacaatctcaatgatgcccaggacatcattgtc
taccatgaactcgtccagccgtcaggtaaaaattggtgtgaagacgagatggagaatgga
ggatgtgaatatctctgcctgccagcaccacagatcaatgaccattctccaaaatatacc
tgttcctgtcccaatgggtacaatcttgaagaaaatggacgagagtgtcaaagtacttca
actcctgtgacttacagtgagacaaaagatatcaacacaacagacattctgcgaactagt
ggactggttcctggagggatcaacgtaaccacagcagtatcagaagtcagtgttcccccc
aaagggacttcagctgcctgggccatccttcctctcttgctcttagtgatggcagcagta
ggtggctatttgatgtggaggaattggcaacataaaaacatgaaaagcatgaactttgac
aatcccgtgtacttgaagaccactgaagaggacctgtcgatagacattggtagacacagc
gcttctgtaggacacacgtacccagcaatatcagttgtaagcacagatgatgatctggct
tga
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