KEGG   Mus pahari (shrew mouse): 110332039
Entry
110332039         CDS       T05929                                 
Symbol
Ddb1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
mpah  Mus pahari (shrew mouse)
Pathway
mpah03420  Nucleotide excision repair
mpah04120  Ubiquitin mediated proteolysis
mpah05161  Hepatitis B
mpah05170  Human immunodeficiency virus 1 infection
mpah05203  Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    110332039 (Ddb1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    110332039 (Ddb1)
 09160 Human Diseases
  09161 Cancer: overview
   05203 Viral carcinogenesis
    110332039 (Ddb1)
  09172 Infectious disease: viral
   05170 Human immunodeficiency virus 1 infection
    110332039 (Ddb1)
   05161 Hepatitis B
    110332039 (Ddb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:mpah04121]
    110332039 (Ddb1)
   03400 DNA repair and recombination proteins [BR:mpah03400]
    110332039 (Ddb1)
Ubiquitin system [BR:mpah04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     110332039 (Ddb1)
DNA repair and recombination proteins [BR:mpah03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      110332039 (Ddb1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      110332039 (Ddb1)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_RIG_2nd Beta_propel
Other DBs
NCBI-GeneID: 110332039
NCBI-ProteinID: XP_021068645
Ensembl: MGP_PahariEiJ_G0014189
LinkDB
Position
1:122478113..122503692
AA seq 1140 aa
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPSRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDSSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcgtacaactacgtcgtaacggcgcagaagcctactgcagtgaacggctgtgtgacc
ggacactttacttcagcagaagatctgaacctgttgattgctaaaaacacaagattagag
atctatgtggtcactgcggagggtcttcggccagtcaaagaggtgggaatgtatggaaag
attgcagtcatggagctcttcaggcccaagggggagagcaaagacctgctgttcatcttg
actgctaagtacaatgcctgtatcctggagtataagcagagtggcgaaagcattgacatc
attacaagagcccatggcaatgtccaggaccgcattggtcgcccctcggagactggcatc
attggcatcattgaccctgagtgccgtatgattggccttcgactctacgatggccttttc
aaggtcattccactagacagagacaataaagaactcaaggcctttaacatccgcctagag
gaactgcatgtcattgatgtcaagttcctgtatggttgtcaagcacctaccatttgcttt
gtctaccaggatcctcaggggcggcatgtgaaaacctatgaggtgtctcttcgagagaag
gagttcaacaagggcccttggaaacaggagaatgtagaagctgaagcttcaatggtgata
gcagtcccagagccttttggaggtgccatcatcattggacaggaatcaatcacctatcat
aacggtgataaatacctggcaattgctcctcctatcatcaagcaaagcactattgtgtgc
cataaccgggtggatcctaatggctcacggtaccttctgggagatatggagggacggctt
ttcatgctgctcttagagaaggaggagcagatggatggcactgtcaccctcaaggacctt
cgagtggaactcctcggagagacctccattgccgagtgcctaacgtatcttgataatggt
gtagtatttgtcgggtctcgcctgggtgactcccagctcgtaaagctcaatgttgacagc
aatgaacaaggctcctatgtagtggccatggaaacctttaccaatttaggacccattgtg
gatatgtgtgtggtggacctggagaggcagggacagggtcagctggtcacttgctctgga
gctttcaaggaaggttccttgcggatcatccggaacggaattggaatccatgagcatgcc
agcattgacttaccaggcatcaaaggtttatggccactgcggtctgaccccagtcgggag
actgatgacactttggtactttcttttgtgggccagacaagagttctcatgctaaacgga
gaggaagtggaagagacagaactgatgggctttgtggacgatcagcagactttcttttgt
ggcaacgtggctcatcagcaacttatccagatcacctcagcatctgtgaggttggtctct
caagagcccaaagctttggtcagcgagtggaaggagcctcagggcaagaacatcagcgtg
gcctcctgtaacagcagccaggtggttgttgccgtgggaagggcactatactaccttcag
atccaccctcaggagctccggcaaatcagccacacagagatggaacatgaagtggcatgc
ctggatatcaccccgttaggggacagcaatggcctgtccccactttgtgccattggactc
tggacagacatctcagctcgtatcctgaagctcccatcctttgaactactgcacaaggag
atgctgggtggagagatcatccctcgatccatcctgatgaccacttttgagagtagccac
tacctcctttgtgccttgggagatggggctcttttctactttgggctcaacatcgagaca
ggtttactgagtgaccgtaaaaaggtgactttgggcacccagcccacagtgttgagaaca
ttccgttctctttctaccaccaacgtctttgcttgctctgatcggcccactgtcatctat
agcagcaaccacaagttggtcttctccaatgtcaacctcaaggaggtgaactatatgtgt
cctctcaactcagatggctatcctgacagtctggcattggccaataacagcactctcacc
attggcaccattgatgagatccagaaactccatattcgcacggttcccctctatgaatct
cccaggaagatctgctatcaggaagtgtctcagtgctttggggtcctttccagccgcatt
gaagtccaagatagcagtggaggcactactgctttgaggcccagtgccagcacccaggcc
ctgtccagcagcgtcagctccagcaaactgttctccagcagtacagctcctcacgagacc
tccttcggagaagaagtggaggtgcataacctcctcatcatcgaccagcatacctttgaa
gtgcttcatgcccatcagtttctacaaaatgagtatgccctcagcctggtctcctgcaag
ttgggtaaagaccccaacacatacttcattgtgggcacagccatggtatatcctgaagag
gcagagcccaagcagggtcgtattgtggtcttccagtattcagatggaaaactgcagact
gtggctgaaaaggaagtaaaaggggctgtgtactctatggtggagtttaatgggaagctg
cttgccagcatcaatagcacggtgcggctctatgagtggaccacagaaaaggagcttcga
actgagtgtaatcactataacaacatcatggccctgtacctgaagaccaagggcgacttc
atcctggtgggcgacctcatgcgttcagtgctgctgcttgcctacaagcctatggaagga
aactttgaagagattgcccgagactttaatcccaactggatgagtgcagtggagatcttg
gatgatgacaattttctgggagctgaaaatgcctttaacttgtttgtgtgtcagaaggac
agtgctgccaccactgatgaggagcggcagcacctacaggaggttggtctcttccacctg
ggcgagtttgtcaatgtgttctgccatggctccctagttatgcagaatctgggcgagact
tctacccctacacagggctcggtgctctttggcacagtcaacggcatgatagggctggtg
acctcgctgtcagagagctggtataacctcctgttggacatgcagaaccggctcaataag
gtcatcaaaagtgtgggcaagattgagcactccttctggagatcctttcacactgagcga
aagacagaaccagccacaggcttcatcgatggtgatctgattgaaagtttcctagatatc
agccgccctaagatgcaggaggttgtggcaaacttgcagtatgatgatggcagtggtatg
aagcgggaggcaactgcagatgacctcatcaaagtcgtggaggagctaactcggatccat
tag

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