Mus pahari (shrew mouse): 110332485
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Entry
110332485 CDS
T05929
Symbol
Casc3
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3
KO
K14323
protein CASC3
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03013
Nucleocytoplasmic transport
mpah03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110332485 (Casc3)
03015 mRNA surveillance pathway
110332485 (Casc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110332485 (Casc3)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110332485 (Casc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
110332485
NCBI-ProteinID:
XP_021069396
Ensembl:
MGP_PahariEiJ_G0018228
LinkDB
All DBs
Position
14:66295757..66319211
Genome browser
AA seq
699 aa
AA seq
DB search
MADRRRQRASQDTEDEESGASASNSGXPARGGGSCSGSAGGGGSGSLPSQRGGRGGGLHL
RRVESGGAKSAEESECESEDAMEGDAVLSDYESAEDSDGEEDYSEEENSKVELKSEANDA
ADSSAKEKGEEKPESKGTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEDRKNPAYIP
RKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYGYD
IRSAHNPDDIKPRRIRKPRFGSSPQRDPNWIGDRSSKSHRHQGPGGNLPPRTFINRNAGG
TGRMSASRNYSRSGGFKEGRTSFRPVEVAGQHGGRSAETLKHEANYRSRRLEQTPLREPS
PEPDPPLLGSPEKEEVASETPAAVPDITPPAPDRPIEKKSYSRARRTRTKVGDAVKAAEE
VPPPSEGLTSAATVPETTTPAAKTGNWEAPVDSTTGGLEQDVAQLNIAEQSWSPGQPSFL
QPRELRGMPNHIHMGAGPPPQFNRMEEMGVQSGRAKRYSSQRQRPVPEPPAPPVHISIME
GHYYDPLQFQGPIYTHGDSPAPLPPQGMIVQPEMHLPHPGLHPHQSPAPLPNPGLYPPPV
SMSPGQPPPQQLLAPTYFSAPGVMNFGNPNYPYAPGALPPPPPPHLYPNTQAPSQVYGGV
TYYNPAQQQVQPKPSPPRRTPQPVSIKPPPPEVVSRGSS
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgcgcttcccaggacacggaggacgaagaatccggggct
tcggcttccaacagcggcntcccggcgaggggcggcggcagctgcagcgggagcgccgga
ggcggcgggagtggctcgctgccttctcagcgcggcggccgcggcgggggccttcatctg
cggcgggtggagagcgggggcgccaagagcgccgaggagtccgagtgtgagagtgaagat
gccatggaaggagatgctgttctttccgattatgaaagtgcagaagattcagacggtgaa
gaagactacagcgaagaggagaattccaaggtggagctgaaatctgaagctaacgatgct
gctgattcctctgcaaaagagaagggagaggaaaagcctgagtctaaaggcaccgtgact
ggggagaggcagagcggcgatgggcaggagagcacagagcccgtggagaacaaagtgggt
aaaaagggccctaagcatttggatgatgatgaagatcggaaaaacccagcatacattccc
aggaaagggctcttctttgagcatgatcttcgaggacagactcaggaagaggaagtccga
cccaagggacggcagcgaaaactatggaaagatgagggtcgctgggagcatgataagttc
cgtgaggatgaacaggccccgaaatctcgacaggagctaattgcactttatggctatgac
attcggtctgctcacaatcctgatgacatcaaacccagaagaatccggaaacctcgattt
ggaagttccccacaaagagatccaaactggattggtgatcgatcaagcaaatcccatcgc
caccagggtcctgggggcaatctaccacctaggacatttattaacaggaatgcaggaggt
actggccgcatgtctgcatccaggaattactctcgatctgggggcttcaaggaaggccgc
actagtttcaggcctgtggaggttgctgggcagcatggcggccggtctgctgagactcta
aagcatgaagctaattaccggtcacggcgtctagagcagacacctctgagggagccatct
ccagaaccagatcctccattgcttggaagtcctgagaaagaagaggtagcctcagagaca
ccagctgctgtgcctgacatcacaccaccagctcctgacaggcccattgagaagaaatcc
tattcccgggcaagaaggaccaggaccaaagttggggatgcagtcaaagctgctgaggag
gttcctcctccatctgaagggctcacttcagcagccacagtcccagaaacaactactcca
gctgctaaaactgggaactgggaggctccagtagattctaccacaggtggactggagcaa
gatgtggcacagctaaatatagcagaacaaagttggagtccaggacagccttcattcttg
cagccacgggaacttcgaggtatgcctaaccacatccacatgggagcaggacctccacct
cagtttaaccggatggaagaaatgggtgtccagagtggtcgagctaagcgttactcatcc
cagcggcagagacctgtgccagagccccctgctcctcctgtgcatatcagtatcatggag
ggacattactatgatccattgcagtttcagggaccaatctatacccatggtgacagccct
gctccactgcccccacagggcatgattgtacagccagaaatgcaccttcctcacccaggt
ttacacccccaccagtcaccagcacctctgcccaatcctggtctctacccaccaccagtg
tccatgtccccaggacagccaccgccccagcaattgcttgctcctacctacttttctgct
ccaggtgtcatgaattttggtaaccccaattacccttatgctccgggagcattgcctcct
cctccacctcctcatctgtatcctaacacacaggctccatcacaggtatatggaggagtg
acttactataaccctgcccagcagcaggtgcagcccaagccctccccaccccggaggact
ccccagccggtctccatcaagccccccccacctgaggttgtaagcaggggttccagttaa
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