Mus pahari (shrew mouse): 110332504
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Entry
110332504 CDS
T05929
Symbol
Lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
110332504 (Lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpah03400
]
110332504 (Lig3)
Enzymes [BR:
mpah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110332504 (Lig3)
DNA repair and recombination proteins [BR:
mpah03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
110332504 (Lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Synaptonemal_3
Motif
Other DBs
NCBI-GeneID:
110332504
NCBI-ProteinID:
XP_021069422
Ensembl:
MGP_PahariEiJ_G0017993
LinkDB
All DBs
Position
14:50505566..50530315
Genome browser
AA seq
1013 aa
AA seq
DB search
MTLAFKILFPRNLCALGRKELCLFPEQNRWAAIRLFSQWSGTNLIGCCLLQRRKPVLTLQ
RGHPRPRATHLTFWPGSHVGLCTGPCAMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG
KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQISQH
IADLSSKATATPKKKAAVQAKLTTTGQVTSPVKGASFITSTNPRKFSGFSAAKPNNSEQA
PSSPAPRTSLSASKCDPKHKDCLLREFRKLCAMVAENPSYNTKTQIIHDFLQKGSTGDGF
HGDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFE
QSKSFPPAAKSLLTIQEVDAFLLHLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHD
LKMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNEQEVEKDPGRRRTLSVQASLMT
PVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHKVA
HFKDYIPKAFPGGQSMILDSEVLLIDNNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIY
FNDVSLMDRPLCERRKFLHDNMVEIRNRIMFSEMKQVTKASDLADMINRVIREGLEGLVL
KDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPD
SQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKA
AVWEITGAEFSRSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKDKADFA
VVAGDEASPTTGGSSGENEGTAGCAGPHKGPKGSPSKSTASAKTTEQKLSNPSSRGGIKP
IPKPSPMKPGEKLAVKSSVKVGMKRKATDETPCLTKVLLDVFTGVQLYLPPSTPDFKRLK
RYFVAFDGDLVQEFDMGSATHVLGDREKNTDAQLVSSEWIWACIRKRRLIAPF
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgactttggctttcaagatcctcttcccaagaaacctttgtgcccttggcagaaaagaa
ctgtgcctgttcccagaacagaatcgctgggctgccataagactgttcagccagtggtcg
ggaacaaatctcattgggtgctgcctcctccagagaagaaagcctgtcctaactctccag
agaggtcatccaagaccacgcgccacccaccttactttctggccagggtcgcatgtggga
ctctgtactggtccctgtgcgatggcagagcagcggttctgtgtggactatgccaagcgg
ggcacagctggctgcaagaaatgcaaggaaaagattgtaaagggcgtatgccgcattggc
aaagtggtacccaaccccttctcagagtctgggggtgatatgaaagagtggtaccacatt
aagtgcatgtttgagaaactggaacgggcgcgggccaccacaaaaaaaattgaagacctc
acagagctggaaggctgggaagagctggaagataatgaaaaggaacagataagccagcat
attgcagacctgtcttctaaggcaactgccacacctaagaagaaagctgctgtccaggct
aagctgacaaccactggccaggtgacatctccagtgaaaggtgcttcgtttattaccagt
accaatcctcggaagttctctggcttttcagcagccaaacccaacaactctgagcaagcc
ccctcaagccctgctcctaggacgagtctgtccgcaagtaaatgtgaccctaagcacaaa
gattgtctgctacgagagttccggaagctgtgcgccatggtggctgaaaatcctagctat
aacaccaagacccagatcatccacgacttcttgcagaaaggctccacaggagatggcttt
cacggtgatgtgtacctaacagtgaagctgctgctgcctggtgttatcaagagtgtttac
aacttgaatgataagcagattgtgaaactttttagccgaatttttaactgcaacccagat
gatatggcccgggacctagaacagggtgacgtgtcagagacgatcagagtcttctttgag
cagagcaagtctttccccccagctgccaaaagcctcctcaccattcaggaagtggatgcc
ttcctcctgcacctctccaagctcaccaaagaggatgagcagcagcaggccctgcaggac
atagcctcccggtgtacagccaatgaccttaagtgcattatccggctgatcaaacatgat
ctgaagatgaactcgggtgcaaaacatgtgttagatgcccttgaccccaatgcttatgaa
gccttcaaagcatcacgcaacctgcaggatgtggtggagcgagtccttcacaatgagcag
gaggtggagaaggacccaggccggcgacggactctgagtgtccaggcctcactgatgacg
cctgtgcagcccatgctggctgaggcctgcaagtccattgaatatgcaatgaaaaagtgt
cccaatggcatgttctctgagatcaaatacgatggtgagcgagtccaggtgcacaagaag
ggggaccacttcagctacttcagccgaagtctcaagcctgtcctgcctcacaaggtggcc
cacttcaaggactatatacccaaagcttttcctgggggtcagagcatgatcttggattcc
gaggtgctcctgattgacaacaacacaggcaaaccactgccctttgggactctgggagtg
cacaagaaagctgctttccaggatgctaatgtctgcctgtttgtttttgattgtatctac
tttaatgatgtcagcttgatggacaggcctctctgtgagcgacggaagtttcttcatgac
aacatggttgaaatccgtaaccggatcatgttctcagaaatgaagcaagtcacaaaagct
tcagacctggctgacatgataaaccgggtgatccgagagggcttggaagggttggtgcta
aaggatgtgaagggtacatatgagcctgggaagcggcactggctgaaagttaagaaagat
tatttgaacgagggggccatggctgatacagctgatctggtggttcttggggccttctat
ggacaagggagcaaaggcggaatgatgtccatcttcctcatgggctgctatgatcctgac
agccagaagtggtgcactgttacaaaatgtgctggaggccacgatgatgccacacttgcc
cgcctgcagaaagagctggatatggtgaagatcagcaaggatcctagcaagatacccagc
tggctgaagatcaacaagatctattatcctgactttatcgtcccagacccaaagaaagct
gctgtgtgggagatcacaggggcagaattttccagatctgaggcacacactgctgatggg
atctccatccgatttcctcgatgcacccgaatccgggacgacaaggactggaaatctgcc
actaacctcccccaactcaaggaactgtaccagctgtccaaagacaaggcagacttcgct
gtggtggctggagatgaggcaagccccactactggaggcagcagtggcgagaatgagggc
actgctgggtgtgctgggccccacaagggccccaagggttcccccagtaagtccactgcc
agtgccaagaccaccgaacagaagctcagtaaccccagtagcagaggtggcatcaaaccg
attccaaagccttcccctatgaaaccaggagagaagctggctgtgaagtcttcagtcaaa
gtgggaatgaaaaggaaagctactgatgagaccccatgcctgacaaaggtgctgttggat
gtcttcactggggtgcagctctacttgccaccttctacaccagacttcaaacgtctcaaa
cgctactttgtggcattcgacggggacctggtacaggaatttgacatgggctcagccaca
catgtgctaggtgacagggaaaagaacactgatgcccagttggtctcctcagagtggatt
tgggcatgtatccggaaacggaggctgatagctcccttctag
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