KEGG   Mus pahari (shrew mouse): 110333029
Entry
110333029         CDS       T05929                                 
Symbol
Seh1l
Name
(RefSeq) nucleoporin SEH1 isoform X1
  KO
K14299  nucleoporin SEH1
Organism
mpah  Mus pahari (shrew mouse)
Pathway
mpah03013  Nucleocytoplasmic transport
mpah04150  mTOR signaling pathway
mpah05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    110333029 (Seh1l)
 09130 Environmental Information Processing
  09132 Signal transduction
   04150 mTOR signaling pathway
    110333029 (Seh1l)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    110333029 (Seh1l)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mpah03019]
    110333029 (Seh1l)
   04131 Membrane trafficking [BR:mpah04131]
    110333029 (Seh1l)
Messenger RNA biogenesis [BR:mpah03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     110333029 (Seh1l)
Membrane trafficking [BR:mpah04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    110333029 (Seh1l)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 WD40_Prp19 Beta-prop_WDR3_1st Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_RIG_2nd WDR90_beta-prop_4th WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 ANAPC4_WD40 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR75_1st EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_C Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_IFT122_1st
Other DBs
NCBI-GeneID: 110333029
NCBI-ProteinID: XP_021070058
Ensembl: MGP_PahariEiJ_G0019103
LinkDB
Position
15:61391889..61414997
AA seq 420 aa
MFVARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVK
FAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQHEISCKLCCSCVSWNPSSSRSHPP
MIAVGSDDSSPNSMAKVQIFEYNENTRKYVKAETLMTVTDPVHDIAFAPNLGRSFHILAV
ATKDVRIFTLKPLRKELTSSGGPTKFEIHIVAQFDNHNSQVWRVSWNITGTVLASSGDDG
CVRLWKANYMDNWKCTGILKGNGSPVNGSSQLGNSNPSLSSNIPNLQNSLNGTSASRYFF
PPLDSPRAGSRWSSCAQLLPPPAPLLEHSCNADTANLQYPHPRRGYLSRPLNPLPENEGV
NT seq 1263 nt   +upstreamnt  +downstreamnt
atgtttgtggcgcgcagcatcgcggcggaccacaaggacctcatccacgatgtgtctttc
gacttccacgggcgccggatggccacctgctccagcgatcagagcgtcaaggtgtgggat
aagagcgagagcggagactggcattgtacagctagctggaagacacatagtggatctgta
tggcgtgtgacatgggctcatcctgaatttggacaagttttggcttcctgttcatttgac
cgaacagcagctgtatgggaagaaatagtaggagaatccaacgataaacttcgaggacag
agtcactgggtgaagaggacaactctagtggacagcagaacatctgttactgatgtgaaa
tttgctcccaaacatatgggtctgatgttagcaacctgttcagcagatggtatagtaaga
atatacgaggctccagatgtgatgaatctcagccagtggtctctgcagcacgagatctca
tgtaagctgtgctgcagctgtgtctcttggaacccttccagctctcgttctcaccccccc
atgatcgctgtgggaagtgatgacagcagtccaaattcaatggccaaggttcagattttt
gaatacaatgaaaataccaggaaatatgtgaaagctgagactcttatgacagtcacagat
cctgtccatgatatcgcgtttgctccaaatttgggaagatctttccacatcctggcagta
gcaaccaaagatgtaagaattttcacattaaaacctctgaggaaagaacttacttcctct
ggtggtccaacaaaatttgaaatccatattgtggctcagtttgataatcataattctcag
gtctggagggtgagttggaacataacaggaacagtcctagcatcttcaggagatgacggc
tgtgttaggttgtggaaagctaattacatggataattggaagtgtactggtattttgaaa
ggtaacgggagcccagtaaatgggagttctcagctgggaaactcaaatccttcactgagc
tcaaatattccaaatcttcaaaattcattaaatggaacttctgctagcaggtatttcttt
ccccctctggattccccacgggctggatcaagatggtccagttgtgcccagctccttcct
cctcctgctcctctgctagagcactcttgcaatgctgacactgccaacctccagtatcct
caccctcgcagaggatacctctctcggcctcttaaccccttacctgagaatgaaggggtg
taa

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