Mus pahari (shrew mouse): 110333172
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Entry
110333172 CDS
T05929
Symbol
Pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110333172 (Pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpah03021
]
110333172 (Pcf11)
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110333172 (Pcf11)
Transcription machinery [BR:
mpah03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110333172 (Pcf11)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110333172 (Pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
Motif
Other DBs
NCBI-GeneID:
110333172
NCBI-ProteinID:
XP_021070383
Ensembl:
MGP_PahariEiJ_G0013211
LinkDB
All DBs
Position
1:complement(63732123..63757973)
Genome browser
AA seq
1684 aa
AA seq
DB search
MSEQTPAEAGAAGAREDACRDYQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEA
QTAKAPSSEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRS
TWDEIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPDEPSTPGTVV
SSPSISTPPIVPDIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQAKAQLAVSLSV
QQETANLGPGSVPSKLHVPQIPTMAVKTPHQVPVQPDKSRAGQSLQMQDLKGTNRDPRLN
RMSQHSSHGKEQSHRKEFVMNTINQSDIKTSKNVPSEKLNSSKQEKSKSGERITKKELDQ
LDSKSKSKSKSPSPLKNKLSHTKDLKNQESESMRLSDMSKRDPRLKKHLQDKAEGKDEDV
KEKRKTVEKKDKDEHMKSSEHRLIGSRSKIINGIVQKQDMVTEELEKQGTKPGRSSTRKR
SRSRSPKSRSPIIHSPKRRDRRSPKRRQRSMSPTLAPKTGKMRQSGLKQSHMEEFPPPSR
EERNIKRSAKQDVRDPRRLKKMDEDRPQETAGQHSMKSGGDPKENIENWQSSKSAKRWKS
GWEENKSLQQGDEHSKPPHLRHRESWSSTKGILSPRAPKQQHRLSVDANLQIPKELTLAS
KRELLQKTSERLASGEITQDEFLVVVHQIRQLFQYQEGKHRCNVRDSPKEENKGGLKKKP
LLSDAELTYYEHKAKLKRTQVQHSFPRLDLLDPDIFDYPLTDALLSGIECEPSKSKHASR
NSGAQFDRKEQFSERARRLSPISGSRTYAENLSPHEGRRRHDEQVSAKGVREEQRSPFND
RFPLKRPRYEDSDKPFVDGPASRFAGLDTNQRLTALAEDRPLFDGPGRPSVTRDGPAKMI
FEGPNKLSPRIDGPPTPGSLRFDGSPGQMGGGGPMRFEGPQGQLGGGCPLRFEGPPGPVG
TPLRFEGPIGQGGGGGGFRFEGSPSLRFEGSTGGLRFEGPGGQPVGGLRFEGHRGQPVGG
LRFEGPHGQPVGSLRFDNPRGQPVGGLRFEGGHGPSGAAIRFDGPHGQPGGGGIRFEGPL
LQQGVGMRFEGPHGQSVAGLRFEGHNQLGGNLRFEGPHGQPGVGIRFEGPIVQQGGGMRF
EGPVPGGGLRIEGPLGQGGPRFEGCHSLRFDGQPGQPSLLPRFDGLHGQPGPRFERTGQP
GPQRFDGPPGQQVQPRFDGVPQRFDGPQHQQASRFDIPLGLQGTRFDNHPSQRIDSFNQS
VPYNDPPGNAFNVSSQGLQFQRHEQIFDTPQGPNFNGPHGPGNQNFPNPINRASGHYFDE
KNLQNSQFGNFGNLPTPISVGNIQASQQVLTGVAQPVAFGQGQQFLPVHPQNPGAFIQNP
SGGLPKAYPDNHLSQVDVNELFSKLLKTGILKLSQPDSATAQVNEAVAQPPPEEEEDQNE
DQDVPDLTNFTIEELKQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWHYRQNRT
EKDVSRKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVLKTQEAAKEKEFQS
VPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDGKIYHPSCYEDYQNTSSFDCT
PSPSKTPVENPLNIMLNIVKNELQEPCESPKVKEEQIDAPPACSEESVATPTEIKTESDT
VESV
NT seq
5055 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagcagacgccggcggaggccggggctgcgggggcccgggaggacgcctgtcgg
gattatcagtcgtcgctggaagacctgaccttcaatagcaaaccgcacatcaatatgctg
accattctcgccgaggagaacctgcccttcgccaaggagatcgtctctctcatcgaggcc
caaaccgccaaggctccttcctcagagaagcttccagttatgtaccttatggattctatc
gtgaaaaatgttggaagagagtatctcactgcctttactaaaaatctagttgcaacattt
atttgtgtgtttgaaaaggtggatgaaaatactagaaaaagtttatttaaattacgatcc
acatgggatgaaatattccctttgaagaaactttatgccttggatgtcagagtcaattca
ttagatcctgcttggcctattaaacctctgcctcctaatgtgaatacatctagcatccat
gtgaatcctaaatttttaaataaatcgcctgatgagccttcaacacctggcacagtggtc
agttcccccagtatctccactcctcccattgtacctgatatacaaaagaatcttacccaa
gaacaactaataaggcaacagttactggcaaaacaaaaacagttgttagaacttcagcag
aaaaagctggagcttgagttagaacaagctaaggcacaactggcagtatctctgagtgtt
cagcaggagacagccaacttgggtcctggatcagtgccatctaaattacatgttccacaa
attcccactatggctgttaaaactccccatcaggtccctgtacaacctgacaaaagccga
gcgggtcagtccttacaaatgcaagacttgaaaggaactaaccgggatccccgtcttaac
aggatgagccaacattcttcccatggcaaagaacagagtcataggaaagaatttgtaatg
aacacaataaaccagtctgatattaaaacaagtaagaatgtaccctctgaaaaactaaat
tcatccaaacaagaaaaaagtaaatcaggtgaaagaataaccaagaaagaacttgaccag
ttagattctaaatccaaatctaagtctaaatcaccatcacctttgaaaaacaaattatcc
cacacaaaagacttgaaaaatcaagaatctgaaagtatgaggttgtctgatatgagtaag
agagacccacgattaaagaagcatcttcaggataaagctgagggcaaagatgaagatgta
aaagaaaagagaaaaactgtagaaaagaaggataaagatgagcacatgaaatcatccgaa
cacaggttgattggaagtagaagtaaaatcataaatggcattgtccaaaaacaagacatg
gttacagaagaattggaaaaacaggggacaaaaccagggagatcaagtactagaaagaga
tcaagatcaaggtcacctaagtctcggtcaccaattatacattccccaaagagaagagat
agacggtcacccaaacgaaggcaaagaagtatgtctcccactttggcacccaaaactgga
aagatgcgtcagtcaggacttaaacagtcacatatggaagaattcccaccaccttccagg
gaagaaagaaatattaagagaagtgctaagcaggatgttagagatcccagacgactgaaa
aagatggatgaggaccgacctcaagaaacggcaggtcaacattctatgaagtcaggtggt
gacccaaaggagaatatagagaattggcaaagctctaagtctgccaaaaggtggaaatct
ggttgggaagaaaataaaagcttacagcagggtgatgaacatagtaaacctcctcaccta
aggcatagggagagctggtcaagcactaaaggaatcttgtcacctcgagccccaaagcag
cagcaccgattaagtgtagatgccaatcttcaaattcctaaagagttaactcttgcaagc
aaaagagaattgcttcaaaagacgagtgaacgtttagcatctggtgaaattacacaggat
gagttccttgttgttgtgcatcaaattcgacagctatttcagtatcaagaaggtaaacat
agatgcaatgtacgggatagtcctaaagaagaaaataaaggtggattaaaaaagaaacct
ctcttatctgatgctgaattaacctactatgaacataaagcaaaactgaaaaggacacag
gttcagcattcatttccaagacttgatctcttagatcctgatatttttgactaccctttg
actgatgccttgttgtcgggaatagaatgtgagccatccaaaagtaaacatgcaagtagg
aatagtggagcacagtttgacagaaaagaacaatttagtgaaagagcaagacgtctttct
cctatatctgggagtcgtacttatgctgagaatctttcaccccatgagggccggagaaga
catgacgaacaagtctctgctaaaggtgtacgagaggagcagagatcaccattcaatgat
cgttttccacttaagcgacctagatatgaagattcagataaaccatttgtagatggccca
gcatcaagatttgctggccttgatacaaatcagcgacttacagctctcgctgaagaccga
ccattatttgatggacctggtaggccatctgtgacgagagatggcccagccaagatgatt
tttgaaggacctaataaattaagccctagaattgatggacctcctacaccaggttctctt
cggtttgatgggtcaccaggacaaatggggggaggaggccctatgagatttgaaggacca
caaggtcagttaggaggtgggtgtcctttgagatttgaaggtcctccaggacctgtagga
acacctctgcggtttgaagggccaattggtcaaggaggaggaggaggtggttttcgattt
gaaggttcacctagtttgaggtttgagggatctacaggtggtttacgatttgaaggacca
gggggtcagcctgtgggtggtctcaggtttgaaggacatcgtggtcaacctgtgggtggt
ctcaggtttgagggacctcatggacagcctgtgggcagtcttagatttgataatcctcga
ggtcagcctgtaggaggacttagatttgaagggggtcatggtccatcaggggctgcaatt
aggtttgatggacctcatggtcagccaggtggtggtggcatcagatttgagggccctttg
ctacagcaaggagttggaatgaggtttgagggtccccatggtcagtctgtagctggtctg
agatttgaaggacataatcagctaggtgggaaccttaggtttgagggaccacatgggcaa
ccaggggttgggatcaggtttgaaggacctatagttcaacaaggaggtggaatgaggttt
gaaggtcctgtaccaggaggtggcctgagaattgaagggcctctgggtcaaggtggtcct
agatttgaaggttgtcactctttaaggtttgatggacagccaggtcagccatcacttttg
ccaagatttgatggattacatggccagccaggtcctagatttgaaagaactggtcagcca
ggtccacagaggtttgatggaccacctggacagcaggttcaaccaagatttgatggtgta
cctcaaagatttgatgggccacaacaccagcaagcatcaagatttgatattcctcttggt
ctacaaggaactcgatttgacaatcacccttcacaaaggattgactctttcaatcagtct
gtcccatataatgatccacctggcaatgcttttaatgtttcatctcaaggattacagttc
caaagacatgaacaaatatttgatacacctcaaggaccaaattttaatggaccacatggc
cctgggaatcagaatttcccaaaccccattaacagagcttccggacactattttgatgaa
aagaatcttcagaattctcagtttggaaactttggcaatttgcctacaccaatatcagta
ggaaatattcaggcatctcaacaggttctgactggtgttgctcagccagtagcgtttggc
caaggacaacagtttttaccagttcatccacagaatcctggagcttttattcaaaatcct
tcaggtggtcttcccaaggcatatcctgataatcatctcagtcaggtggatgtaaacgaa
ttgttttcaaaactgctaaaaacaggaattctcaagttgtcacagcctgattcagctaca
gcacaggtaaatgaggctgttgctcagcctccccctgaggaggaggaggatcagaatgaa
gatcaagatgttccagatcttactaatttcacaattgaagaattgaagcaacgttatgac
agtgtcataaaccggctgtacactgggattcaatgttactcttgtggaatgaggtttacg
acatcccagacagatgtttatgcagatcacttggactggcattatcggcaaaatagaact
gagaaagatgttagcagaaaagttactcatagacgttggtactacagtctaacagattgg
atagaatttgaagaaatagctgatctggaagaacgtgcaaaaagtcagttttttgaaaag
gttcatgaagaggttgtccttaaaactcaggaggctgctaaagaaaaggagttccaaagt
gtacctgctggaccagctggagcagttgagagttgtgaaatctgtcaagaacagtttgaa
cagtactgggatgaagaggaggaagagtggcacttaaaaaatgctattcgagtagatgga
aagatttaccatccatcatgttatgaagattatcaaaatacatcttcatttgattgcaca
ccatctcccagcaagacaccagttgaaaaccctttgaacattatgttgaacattgtcaaa
aacgaattgcaagaaccctgtgaaagtcccaaagttaaggaagaacaaattgatgcccca
ccagcttgttcagaagaaagtgtagcaacacctactgaaattaaaacagaaagtgataca
gttgagtcagtttaa
DBGET
integrated database retrieval system
