Mus pahari (shrew mouse): 110334304
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Entry
110334304 CDS
T05929
Symbol
Cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mpah03016
]
110334304 (Cdkal1)
Enzymes [BR:
mpah01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
110334304 (Cdkal1)
Transfer RNA biogenesis [BR:
mpah03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
110334304 (Cdkal1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
110334304
NCBI-ProteinID:
XP_021071789
Ensembl:
MGP_PahariEiJ_G0019452
LinkDB
All DBs
Position
16:complement(32883199..33388950)
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AA seq
618 aa
AA seq
DB search
MPSASCDVMLDDIEDIISQEDSKPQDRQFSRKHVFPKVRRRNTQKYLQEEPRPPSDSTIP
GIQKIWIRTWGCSHNNSDGEYMAGQLAAYGYKITENASDADLWLLNSCTVKNPAEDHFRN
SIKKAQEENKKVVLAGCVPQAQPRQDYLRGLSIIGQALLHCCCTEAALRLHWAAPSLNPC
CLVPKPMFLLFCEAAVENRMEAFLLEREDVSCHSVRLLGQKKDNGKRLGGARLDLPKIRK
NPLIEIISINTGCLNACTYCKTKHARGNLASYPIDELVERATQSFQEGVCEIWLTSEDTG
AYGRDIGTDLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHLEEMAKILNHPRVYAFLHIP
VQSASDSVLMDMKREYCVADFKRVVDFLKEKVPGITIATDIICGFPGETDQDFQETVKLV
EEYKFPSLFINQFYPRPGTPAAKAEQVPAHVKKQRTKDLSRVFHSYNPYDHKIGERQQVL
VTEESFDSKFYVAHNRFYEQVLVPKNPAFMGKMVEVNIYESGKHFLKGQPVSETRVYTPS
ISKPLAKGEVSGLTKEFRNRLGNHLNGTSDTCPATPHGSAYSRMVLQMSQYDCALKVAAG
LALVALLLHFWPESMLTV
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgccttctgcgtcctgtgatgtaatgctggatgacatagaagatatcatatcacaggaa
gattcaaagccacaagacagacagttttcaagaaagcatgtgtttcctaaagtacgaagg
cggaatacccaaaaatatttgcaagaagagcccaggccaccaagtgacagcactattcca
ggcatacagaaaatttggatacgaacatggggctgctcacataataattcagatggagaa
tacatggctggacagcttgctgcctatggctataaaattacagagaatgcatcagatgca
gatctgtggctcctgaacagttgtactgtgaaaaatccagctgaagaccactttagaaac
tcaatcaaaaaagctcaagaggagaataagaaagttgtcctcgctggctgtgttccccaa
gcccagcctcgtcaggactacctcagaggactcagcatcattgggcaggccttgctgcac
tgctgctgtactgaggctgcactgaggctgcactgggcagcgccaagtctgaacccttgc
tgtctggttccaaagcccatgttccttctgttctgcgaagctgctgtggagaacaggatg
gaagcgtttctgttagagcgagaggatgtgtcgtgtcactcagtgaggctcctgggccag
aagaaagacaacgggaagcgcttgggtggagcccggctggatttgccgaagataagaaag
aatccgctgatagaaatcatttccatcaacacggggtgtctcaatgcttgtacctactgc
aaaactaaacacgccagaggaaacctggccagctatcccattgatgaacttgtggagagg
gccacgcagtcctttcaagagggtgtttgtgagatatggctgaccagcgaggacaccggg
gcctatggcagagacattggcaccgatctccccacactcctgtggaagttggtggaagtg
attcctgagggagccatgctgaggctgggcatgacaaatccaccatatattttagagcat
ctggaggaaatggcaaaaatcctcaaccaccccagagtctacgctttcctccacatccca
gtgcagtccgcctctgacagtgtgctcatggacatgaagagagagtactgcgtggccgac
ttcaaaagggttgtggattttctcaaggagaaggttcctggaataacgattgctacggat
attatctgtggttttcctggagaaaccgatcaggattttcaagaaacagtgaaacttgtt
gaagagtacaaatttccaagcctcttcatcaaccagttctatccaagacccggaactccc
gctgcaaaagccgaacaggttccagcacacgtgaaaaaacaaaggacaaaggatctttct
cgggtgtttcattcctacaatccatatgatcacaagattggtgaaagacagcaagtgcta
gtcacagaagagtcttttgactccaagttttatgttgctcacaaccgattctatgagcag
gttttagtaccaaagaaccctgcattcatggggaaaatggttgaagtcaacatttatgaa
tcaggaaaacactttttgaaaggacagccagtatcagaaaccagagtgtatacaccgtcc
atcagcaagccgctggccaagggagaagtctcaggtttgacaaaggaattcagaaatagg
cttgggaatcatctgaatggaacttcagacacctgtcctgcaactccacatggctcggct
tattccagaatggtgctgcagatgtcccagtatgactgtgcactgaaggtggctgcaggc
ctggctctcgtcgctctccttctgcatttctggccagagtctatgcttacagtgtaa
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