Mus pahari (shrew mouse): 110334482
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Entry
110334482 CDS
T05929
Symbol
Pabpc1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03015
mRNA surveillance pathway
mpah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110334482 (Pabpc1)
09123 Folding, sorting and degradation
03018 RNA degradation
110334482 (Pabpc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110334482 (Pabpc1)
03041 Spliceosome [BR:
mpah03041
]
110334482 (Pabpc1)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110334482 (Pabpc1)
mRNA cycle factors
Stress granule specific factors
110334482 (Pabpc1)
Spliceosome [BR:
mpah03041
]
Complex C
Other components
Complex C specific factors
110334482 (Pabpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_7
RRM_5
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
110334482
NCBI-ProteinID:
XP_021071864
Ensembl:
MGP_PahariEiJ_G0019749
LinkDB
All DBs
Position
17:complement(3585871..3599869)
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AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYVKNLGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVTSATGVPTV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctctctgtacgtgggggacctgcacccc
gacgtgaccgaggcgatgctctatgagaagttcagccccgcagggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccttgggctacgcgtacgtgaacttccag
cagccggcggacgcggaacgtgctttggacaccatgaattttgatgttataaagggcaag
ccagtacgcatcatgtggtctcagcgtgatccatcacttcgcaaaagtggagtaggcaac
atattcattaaaaatttggacaaatccatcgacaataaagcactatatgatacattttct
gcatttggtaacatcctttcatgtaaggtggtttgcgatgaaaatggctccaagggctat
ggatttgtacattttgaaacacaggaagcagctgaaagagctattgaaaaaatgaatggg
atgcttctaaatgatcgtaaagtgtttgttggacgatttaaatctcggaaggaacgagaa
gcagaacttggagccagggcaaaggagttcaccaatgtttacgtcaagaatttgggagaa
gacatggatgatgagcgcctcaaggaactctttggcaagtttgggcctgccttaagtgtg
aaagtaatgacagatgaaagtggaaaatccaaaggattcggattcgtaagctttgaaagg
catgaagatgcgcagaaagctgtggatgagatgaatggaaaggagctcaatggaaaacag
atttatgttggtcgagctcagaaaaaagtggaacggcagacggaacttaagcgcaaattt
gagcagatgaagcaagacaggatcaccagatatcagggtgtgaacctttatgtgaaaaat
cttgatgacggtattgatgatgagcgtctccggaaggagttttctccgtttggtacaatc
accagtgcaaaagtaatgatggagggtgggcgcagcaaaggctttggttttgtatgtttc
tcatcccctgaagaagccactaaagcagttacagagatgaatggtagaattgtggccacg
aagccactgtatgtagctttagctcagcgcaaagaagagcgccaggctcacctcactaac
cagtatatgcagaggatggcaagtgtacgagctgtgcccaaccccgtgatcaacccctac
cagccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatactatcctcctagccaaatcgctcaactaagaccaagtcctcgctggactgctcag
ggtgccagacctcatccattccagaatatgcccggtgctatccgcccagctgctcctaga
ccaccatttagtacgatgagaccagcttcctcacaggttccacgagtcatgtcaacacag
cgtgttgctaacacatcaacacagacaatgggtccacgtcctgcagctgctgctgctgca
gccactcctgctgtccgcaccgttccccagtataaatatgctgcgggagtccgcaatccc
cagcaacatcttaatgcacagccacaagttaccatgcaacagcccgctgttcatgtgcaa
ggtcaagaacctttaactgcttccatgttggcatctgcacccccacaagagcagaagcaa
atgttgggtgaacggctgtttcctcttatccaagccatgcacccttctcttgctggcaaa
atcactggcatgctgttggagattgataactcagaattacttcacatgctcgagtctcca
gagtctctccgctcaaaggttgatgaagctgtagctgtactacaagcccaccaagcgaaa
gaggctgcccagaaagcagtgaccagtgccactggtgtgccaactgtctaa
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