Mus pahari (shrew mouse): 110334699
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Entry
110334699 CDS
T05929
Symbol
Prpf40b
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110334699 (Prpf40b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mpah03041
]
110334699 (Prpf40b)
Spliceosome [BR:
mpah03041
]
Complex A
U1 snRNP components
U1 related factors
110334699 (Prpf40b)
Complex B
110334699 (Prpf40b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
SelB-wing_2
RhoGAP-FF1
WW_2
Motif
Other DBs
NCBI-GeneID:
110334699
NCBI-ProteinID:
XP_021072198
Ensembl:
MGP_PahariEiJ_G0020266
LinkDB
All DBs
Position
17:63815843..63881454
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AA seq
892 aa
AA seq
DB search
MSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGLPPPFPPMGLPPMSQRPPAIPPMPPGI
LPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVAGTGPPRALW
SEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSQE
SRWTRPKDLDDLEALVKQESAGKQQTQQLQTLQPQPPQPQPDPPPIPPGPIPVPMALLEP
EPGRSEDCDVLEAAQPLEQGFLQRDEGPSSSTGQHRQPQEEEEAKPEPERSGLSWSNREK
AKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEE
ARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGDLEVWAVVPERDRKEVYDDVLFFL
AKKEKEQAKQLRRRNIQALKSILDGMSSVNFHTTWSQAQQYLMDNPSFAQDQQLQNMDKE
DALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQSFLDELHETGQLHSMSTWME
LYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTA
FEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLR
QAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTECQHLHTKGRKH
GRKGKKHHRKRSHSPSGSESDEEDLPPPSLRPPKRRRRNPSESGSEPSSSLDSVESGGAA
LGGPGSPSSHLLLGSDHGLRKTKKPKKKTKKRRHKSTSPDSETDPEDKAGKESEDREQEQ
DREPRQAELPNRSPGFGIKKEKTGWDTSESELSEGELERRRRTLLQQLDDHQ
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccgattctggtccccggcccccagcagcgcctgcccccttcccaccgggg
ccccccatgatgccaccacccttcatgccccctccagggctcccacctccttttcctccg
atggggctcccccctatgagtcagagaccaccagccattccccccatgccacctggtata
ctgcccccaatgcttccaccaatgggggcaccgccaccacttacacagataccaggaatg
gtccctccgatgatgccagggatgctgatgccagcagtgcctgtcactgcagcgacggct
ccgggtgcggacaccgccagctctgctgtggccgggacaggccctccgagggccttatgg
agtgaacacgtggcccctgatgggcgcatctactactacaatgctgatgataagcaatcc
gtgtgggagaagcccagcgtcctcaagtctaaggcagagctgctactgtcccagtgtccc
tggaaagagtataagtcagacacagggaagccttactactacaacaaccagagtcaggag
tcccgttggacccggcccaaggacctggatgacctggaagccctagtcaagcaagagtct
gcaggaaaacagcagacccagcaactacagacactacagccacaaccacctcagccacag
cctgaccctccacctatacctccgggtcccatcccagtgcctatggccctcctggaacct
gaaccaggtcgaagtgaagactgtgatgtgctggaggctgcccagcccctggagcagggc
ttcctgcagcgggacgagggccccagcagttctactggacagcatcggcaaccacaggaa
gaggaggaagctaagccagaaccagagagatctggcctcagttggagcaaccgggagaag
gcaaagcaggcattcaaagaactgctaagggacaaggctgtcccttccaatgcttcgtgg
gaacaggccatgaagatggtagtcaccgacccccgctacagtgccttgcccaaactaagt
gagaagaagcaggcgttcaatgcttacaaggctcagcgggagaaggaggagaaagaggag
gcccggctgagagccaaggaggccaagcagaccctgcagcactttctggaacagcacgaa
cgcatgacctccaccacccgctaccggcgggcagaacagacttttggggacctggaggtc
tgggctgtggtccctgagagagatagaaaagaagtttatgatgatgtcctcttcttcctg
gccaagaaggagaaggaacaagccaagcagctccggcgtaggaatatccaggccctgaag
agcatcctggatgggatgagcagtgtcaacttccacaccacgtggtcccaggcccagcag
tacctcatggataaccccagctttgctcaggaccagcagctgcagaacatggacaaggaa
gacgcacttatctgctttgaggagcatatccgagctttggagagagaggaggaggaggag
cgggaacgggcccggcttcgggagcggcgacagcagcggaagaatcgggaggcctttcag
agcttcctggacgagctgcatgagacagggcagctgcattccatgtccacctggatggag
ctgtacccggcagtcagcaccgatgttcgctttgccaacatgctgggccagccgggctct
actcctttggacttgttcaagttctatgtggaggagttgaaggctcgattccacgatgag
aagaagatcataaaggatattcttaaggaccggggcttctgtgtggaggtgaacacagca
tttgaggacttcgcccacgtcataagctttgacaagagggctgctgcgctggacgcaggc
aacatcaagctgaccttcaatagtctgctggaaaaagcagaggcacgggagagggaacgg
gaaaaggaggaggcccgaaggatgcggcgcagagaagctgcctttcgaagcatgctgagg
caggccgtgcctgctctggagctgggcactgcctgggaagaggtccgtgagcgctttgtg
tgcgactcagcctttgagcagatcaccctggagtcggagcggatccggctcttccgagag
ttcctgcaggtgctggagcagactgaatgccagcacctccacaccaaaggccgaaagcat
ggcagaaagggcaagaaacaccatcgcaagcgttcacactcaccctcaggctctgagtca
gatgaagaggacctgcccccaccatccctccggccccccaagcggaggaggcggaacccc
tcagaatctggctctgagccctcctcctcacttgattcagttgaaagtgggggtgctgct
cttggaggaccaggctccccatcttcccaccttcttcttgggtcagatcatggtcttcgg
aaaaccaagaaaccaaaaaagaaaactaagaaaagaagacacaagtcgaccagtcctgac
agtgagacggaccccgaagacaaagctggtaaggagagtgaagacagagaacaggaacag
gacagggaaccccggcaggcagagctccctaaccgttccccaggcttcggaatcaagaag
gagaagacaggctgggacacatcagaaagcgagctgagtgagggggagctggagaggcga
aggcggacactcctacagcagctggacgaccaccaatga
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