Mus pahari (shrew mouse): 110334787
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Entry
110334787 CDS
T05929
Symbol
Scn8a
Name
(RefSeq) sodium channel protein type 8 subunit alpha isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
110334787 (Scn8a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mpah04040
]
110334787 (Scn8a)
Ion channels [BR:
mpah04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
110334787 (Scn8a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
IQ
GPHH
HB_ELP1
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
110334787
NCBI-ProteinID:
XP_021072392
Ensembl:
MGP_PahariEiJ_G0020302
LinkDB
All DBs
Position
17:65387590..65563491
Genome browser
AA seq
1988 aa
AA seq
DB search
MAARLLAPPGPDSFKPFTPESLANIERRIAESKLKKPPKADGSHREDDEDSKPKPNSDLE
AGKSLPFIYGDIPQGLVAVPLEDFDPYYLTQKTFVVLNRGKTLFRFSATPALYILSPFNL
IRRIAIKILIHSVFSMIIMCTILTNCVFMTFSNPPEWSKNVEYTFTGIYTFESLVKIIAR
GFCIDGFTFLRDPWNWLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTI
VGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVVWPINFNESYLENGTRGF
DWEEYINNKTNFYMVPGMLEPLLCGNSSDAGQCPEGFQCMKAGRNPNYGYTSFDTFSWAF
LALFRLMTQDYWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQA
TLEEAEQKEAEFKAMLEQLKKQQEEAQAAAMATSAGTVSEDAIEEEGEDGVGSPRSSSEL
SKLSSKSAKERRNRRKKRKQKELSEGEEKGDPEKVFKSESEDGMRRKAFRLPDNRIGRKF
SIMNQSLLSIPGSPFLSRHNSKSSIFSFRGPGRFRDPGSENEFADDEHSTVEESEGRRDS
LFIPIRARERRSSYSGYSGYSQCSRSSRIFPSLRRSVKRNSTVDCNGVVSLIGPGSHIGR
LLPEVKIDKAATDSATTEVEIKKKGPGSLLVSMEQLASYGRKDRINSIMSVVTNTLVEEL
EESQRKCPPCWYKFANTFLIWECHPYWIKLKEIVNLIVMDPFVDLAITICIVLNTLFMAM
EHHPMTPQFEHVLTVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMEL
GLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVV
GMQLFGKSYKECVCKISQECKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAM
CLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGVAWAK
VKVHAFMQAHFKQREADEVKPLDELYEKKANCIANHTGVDIHRNGDFQKNGNGTTSGIGS
SVEKYIIDEDHMSFINNPNLTVRVPIAVGESDFENLNTEDVSSESDPEGSKDKLDDTSSS
EGSTIDIKPEVEEVPVEQPEEYLDPDACFTEGCVQRFKCCQVNIEEGLGKSWWILRKTCF
LIVEHNWFETFIIFMILLSSGALAFEDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWT
AYGFVKFFTNAWCWLDFLIVAVSLVSLIANALGYSELGAIKSLRTLRALRPLRALSRFEG
MRVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETSEIRFEIEEVNN
KTDCEKLMEGNNTEIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKPDEQP
DYEGNIYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAM
KKLGSKKPQKPIPRPLNKIQGIVFDFVTQQAFDIVIMMLICLNMVTMMVETDTQSKQMEN
ILYWINLVFVIFFTCECVLKMFALRHYYFTIGWNIFDFVVVILSIVGMFLADIIEKYFVS
PTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSN
FAYVKHEAGIDDMFNFETFGNSMICLFQITTSAGWDGLLLPILNRPPDCSLDKEHPGSGF
KGDCGNPSVGIFFFVSYIIISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFYEIW
EKFDPDATQFIEYCKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFT
KRVLGDSGELDILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVLQRAYRGHLAR
RGFICRKITSNKLENGGTHREKKESTPSTASLPSYDSVTKPEKEKRQRAEEGGRERVKRQ
KEVRESKC
NT seq
5967 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgcggctgctcgcaccaccaggccccgacagtttcaagcctttcaccccagag
tcgctggcaaacatcgagaggcgcatcgccgagagcaagctcaagaaaccacccaaggcg
gatggcagccaccgggaagacgatgaagacagcaagcccaagccaaacagtgacctggag
gcggggaagagtttgcctttcatctatggggacatcccgcaaggcctggttgcggttccc
ctggaggactttgacccatactatttgacgcagaaaacttttgtagtattaaacagaggg
aaaactctcttcagatttagcgccactcctgccttgtacattctaagtccttttaacctg
ataagaagaatagctattaaaattttgatacattcagtcttcagcatgatcatcatgtgc
accatcctgaccaactgtgtattcatgacttttagtaaccctcccgaatggtccaagaat
gtggagtacacattcacagggatttacacatttgaatcactagtgaaaatcatcgccaga
ggtttctgcatagacggcttcaccttcttacgagacccgtggaactggttagacttcagt
gtcatcatgatggcatatgtgacagagtttgtggacctgggcaatgtctcagcgctgaga
acattcagggttctccgagctttgaaaactatctctgtaattccaggcctgaagacaatc
gtgggcgccctcatccagtctgtgaagaagctgtcagacgtgatgatcctgacggtgttc
tgcctgagtgtcttcgccctgattggcctgcagctcttcatggggaaccttcgaaataag
tgtgtcgtgtggcccataaacttcaacgagagctatctcgagaacggcaccagaggcttt
gactgggaagagtacatcaacaataaaacaaacttttacatggtccctggcatgctagaa
cccttgctctgcgggaacagttctgacgccgggcaatgccctgaggggttccagtgcatg
aaagcaggaagaaatcccaactatggctataccagctttgacaccttcagctgggccttc
ttggcattatttcgccttatgactcaggactattgggagaacttataccagctgacctta
cgagcggctgggaaaacgtacatgatcttctttgtcttggtcatcttcgtgggttctttc
tatttggtgaacttgatcttggctgtggtggccatggcttatgaagagcagaaccaggca
acactggaggaggcagagcagaaagaggccgagttcaaggcaatgctggagcagctcaag
aagcagcaggaggaggcacaggctgctgcgatggccacttcggcgggcactgtctcagaa
gatgccattgaagaagaaggggaagatggggtaggctctccgaggagctcatctgaactg
tctaaactcagctccaagagcgcaaaggagcggaggaatcgaaggaagaagaggaagcag
aaggagctctctgaaggggaggagaagggggaccccgagaaggtctttaagtcagagtcg
gaagatggcatgagaaggaaggccttccggctgccagacaacaggatagggaggaaattt
tccattatgaatcagtcgctgctcagcatcccaggctcgcccttcctctctcgacacaac
agcaaaagcagcatcttcagctttcggggtcccgggcggttccgggaccccggttcggag
aacgagttcgcagacgacgagcacagcacagtggaagagagcgagggccggcgcgactcg
ctcttcatcccgatccgcgcccgcgagcgccgcagcagctacagtggctacagcggctac
agccagtgcagccgctcgtcgcgcatcttccccagcctgcggcgcagcgtgaagcgcaac
agcaccgtggactgcaatggcgtggtgtcgctcatcgggcctggctcgcacatcgggcgg
ctcctgcctgaggtgaaaatagataaggcagctacggacagtgcaacaactgaggtggag
attaagaagaaaggccctggatctctcttagtctccatggaacaactcgcctcctacgga
cggaaggacagaatcaacagtataatgagcgttgtcacaaacacactagtggaagagctg
gaagagtctcagagaaagtgcccaccgtgctggtataagtttgccaatactttcctcatc
tgggagtgtcacccctactggataaaactgaaggagatcgtgaacttgatcgtcatggac
cctttcgtagacttagccataaccatctgcattgttctgaacacactgtttatggcaatg
gagcaccatcccatgacgccacaattcgaacacgtcctgaccgtagggaacctggtgttc
actgggatcttcacagcggaaatgttcctgaagctcatagccatggatccctactattac
ttccaagaaggctggaatatttttgacgggtttatcgtctccctcagtttaatggagctg
ggcctcgcagacgtggaggggctctcagtgctgcggtctttccgattgctccgagtcttc
aaattggccaagtcctggcccaccctgaacatgctgatcaagatcatcgggaactccgtt
ggcgccctgggtaacctgaccctggtgctggccatcatcgtcttcatctttgctgtggtg
gggatgcagctgtttggaaagagctacaaggagtgcgtctgtaagatcagccaggagtgc
aagctcccacgctggcacatgaacgacttcttccactccttcctcatcgtcttccgagtg
ctgtgcggggagtggatcgagaccatgtgggactgcatggaggtggccggccaggccatg
tgccttattgtgttcatgatggttatggtcatcggcaacctggtggtgctgaacctattt
ctggccttgcttctgagctccttcagcgcagacaatctggcggccacagacgacgacggg
gaaatgaacaacctgcagatctccgtgatccgaatcaagaagggcgtggcctgggccaaa
gtgaaggtgcacgccttcatgcaggcgcacttcaagcaacgggaggcggatgaagtgaaa
cctctagacgagctgtatgagaagaaggccaactgcatcgccaaccacaccggcgtggac
attcacaggaacggtgacttccagaaaaacgggaacggtaccaccagcggcatcggcagc
agtgtggagaagtacatcattgatgaggaccacatgtccttcattaacaacccaaacctg
accgtccgggtgcccattgctgtgggcgagtctgatttcgagaacctcaacacagaggat
gttagcagcgagtcagacccggaaggcagcaaagacaaactggacgataccagctcctcg
gaaggaagtaccatcgacatcaagcctgaggtggaagaagtcccagtggagcagcctgag
gaatacctggatccagacgcctgcttcacagagggttgtgtccagcggttcaagtgctgc
caggtcaacatcgaggaaggactaggcaagtcgtggtggatcctgcggaaaacctgcttc
ctcattgtggagcacaattggtttgagacctttatcatcttcatgattctcctcagcagt
ggtgccctggccttcgaggacatctacattgagcagaggaagaccatccgtaccatcctg
gagtacgcggacaaggtcttcacctacatcttcatcctggagatgttgctcaaatggaca
gcctatggtttcgtcaagttcttcaccaatgcctggtgctggttggacttcctcattgtg
gctgtctctttagtcagccttatagctaatgccctgggctactcggaactaggtgccata
aagtcccttaggaccctaagagctttgagacccttaagagccttatcacgatttgaaggg
atgagggtggtggtgaacgccttggtgggcgccatcccctccatcatgaacgtgctgctg
gtgtgtctcatcttctggctgattttcagcatcatgggcgttaacctgtttgcggggaaa
taccactactgcttcaacgagacttcagaaatccggtttgaaattgaagaggtgaacaat
aaaactgactgtgagaaactcatggagggaaacaacacggagatccgatggaagaacgtc
aagatcaacttcgacaatgttggggcaggctacctggcccttcttcaagtggcaaccttc
aaaggctggatggacatcatgtatgcagctgtagattcccgaaagccggatgagcagccc
gattatgagggcaacatctacatgtacatctacttcgtcatcttcatcatcttcggctcc
ttcttcaccctcaacctgtttatcggtgtcatcattgacaacttcaatcaacagaagaaa
aagtttggaggtcaggacatcttcatgacagaggaacagaagaagtactacaacgccatg
aagaagctaggctccaagaagccacagaagcccatcccccgacccttgaacaaaatccaa
gggattgtctttgatttcgtcacgcaacaagcctttgacatcgtgatcatgatgctcatc
tgccttaatatggtgaccatgatggtggagacggacacgcagagcaagcagatggagaac
attctttactggattaatctggtcttcgtcatcttcttcacctgcgagtgtgtgctcaaa
atgtttgccttgagacactactatttcaccatcggctggaacatctttgactttgtggtg
gtcatcctctccattgtgggaatgttcctggctgatatcattgagaagtacttcgtctcc
ccgaccctattccgtgtcatccgattggcccgcatcgggcgcatcttgcgtctgatcaag
ggcgccaaagggatccgcaccctgctctttgccttaatgatgtcgctgcccgccctattc
aacatcggcctcctgctcttcctggtcatgttcatcttctccatctttgggatgtccaac
ttcgcgtatgtgaagcacgaggccggcattgatgacatgttcaacttcgagacatttggc
aacagcatgatctgcctgttccagatcacgacctctgctggttgggacggcctactgctg
ccaatcctgaaccgcccccctgactgcagcttggacaaggagcaccctggaagtggcttc
aaaggggattgtgggaacccctccgtgggcatcttcttcttcgtcagctacatcatcatc
tcctttctgatcgtggtgaacatgtacattgccatcatcttggagaacttcagtgtagcc
acggaggagagcgccgatcctctgagcgaggacgacttcgagactttctatgagatctgg
gagaagttcgatcctgatgccacccagttcatcgagtactgtaagctggcagactttgcc
gacgccctggagcatccgctccgagtacccaagcccaacaccatcgagctcatcgccatg
gacctgcccatggtgagcggagatcgaatccactgcttggacatccttttcgccttcacc
aagcgagtcctgggagacagtggggagttggacatcctgcggcagcagatggaggaacgg
ttcgtggcttccaacccttccaaagtgtcttacgagcctatcacaaccactctgaggcgc
aagcaggaggaagtgtctgcagtggtcttgcagcgcgcctacaggggacacttggccagg
cggggcttcatctgcagaaagatcacttccaacaagctggagaatggaggcacacaccgg
gagaagaaggagagcaccccgtccacagcctccctcccctcttacgacagtgtgacaaag
cccgagaaggagaagcggcagcgtgcagaggaaggcgggagggaaagagtcaagaggcaa
aaggaggtcagggagtccaagtgctag
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integrated database retrieval system
