Mus pahari (shrew mouse): 110335075
Help
Entry
110335075 CDS
T05929
Symbol
Col2a1
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah04151
PI3K-Akt signaling pathway
mpah04510
Focal adhesion
mpah04512
ECM-receptor interaction
mpah04518
Integrin signaling
mpah04974
Protein digestion and absorption
mpah05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
110335075 (Col2a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110335075 (Col2a1)
04518 Integrin signaling
110335075 (Col2a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110335075 (Col2a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
110335075 (Col2a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
110335075 (Col2a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mpah00536
]
110335075 (Col2a1)
Glycosaminoglycan binding proteins [BR:
mpah00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110335075 (Col2a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
110335075
NCBI-ProteinID:
XP_021072817
Ensembl:
MGP_PahariEiJ_G0020222
LinkDB
All DBs
Position
17:complement(62561169..62590626)
Genome browser
AA seq
1486 aa
AA seq
DB search
MIRLGAPQSLVLLTLLIAAVLRCQGQDAQEAGSCLQNGQRYKDKDVWKPSSCRICVCDTG
NVLCDDIICEDPDCLNPEIPFGECCPICPADLATASGKLGPKGQKGEPGDIKDIIGPKGP
PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAA
QMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGP
RGPPGPAGKPGDDGEAGKPGKSGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGE
AGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGP
AGGPGFPGAPGAKGEAGPTGARGPEGAQGSRGEPGNPGSPGPAGASGNPGTDGIPGAKGS
AGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGFKGEQGPKGETGPAGPQGA
PGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP
KGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGV
MGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPSGPAGERGEQGAPGP
SGFQGLPGPPGPPGEGGKQGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGL
PGTPGTDGPKGASGPDGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGK
DGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGSTGARGAPGERGETGPPGPAGFAGPPGA
DGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGA
AGRVGPPGSNGNPGPAGPPGPAGKDGPKGARGDSGPPGRAGDPGLQGPAGAPGEKGEPGD
DGPSGSNGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSSGDRGPPGP
VGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAGP
TGKQGDRGEAGAQGPMGPSGPAGARGIAGPQGPRGDKGESGEPGERGLKGHRGFTGLQGL
PGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPAGP
PGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEADSTLRQHDVEVDATLKS
LNNQIESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETGE
TCVYPNPATVPRKNWWSSKNKEKKHVWFGETMNGGFHFSYGDGNLAPNTANVQMTFLRLL
STEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTKH
TGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGAEQEFGVDIGPVCFL
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atgatccgcctcggggctccccagtcgctggtgctgctgacgctgctcatcgccgcggtc
ctacggtgtcagggccaggatgcccaggaggctggcagctgtctgcagaatgggcagagg
tataaagataaggatgtatggaagccctcatcttgccgcatctgtgtgtgtgacactggg
aatgtcctctgcgatgacataatctgtgaagacccagactgcctcaaccctgagatcccc
ttcggagagtgctgtcccatctgcccagctgacctcgccactgccagtggaaaattaggg
ccaaaggggcagaaaggagaacctggagacatcaaagatatcataggacccaaaggacct
cctggccctcagggacctgcgggtgaacaaggacccagaggtgatcgtggtgacaaggga
gaaaagggtgcacccggaccccgtggcagagatggagaacctggtacccctggaaatcct
ggcccccctggccccccaggtcccccaggtccccctggccttggtggaaacttcgcggcc
cagatggctggagggtttgacgagaaggctggtggtgcccagatgggagtcatgcaaggc
cccatgggtcccatgggacctcgtggacccccaggccctgccggtgcccccggccctcaa
ggatttcaaggcaatcctggtgaacctggcgagcctggtgtctctggtcccatgggtccc
cgaggtcctcctggccctgctggaaaacctggtgatgatggtgaagctgggaagcccgga
aagtctggggaaagaggcctccctggccctcagggtgctcgtggattcccgggaacccca
ggtctccctggtgtcaagggtcacagaggttacccaggcctcgatggtgctaagggagaa
gcgggtgctccgggtgtgaagggtgagagtggttcccctggtgagaacggatccccaggc
ccaatgggtccccgtggcctgcctggcgagagaggacggactggccctgctggtgctgct
ggtgctcggggtaacgatggccagccaggccccgctggacctccgggtcctgttggtccc
gcaggtggtcctggcttccctggtgctcccggtgccaagggcgaagctggtcccactggg
gctcgtggtcctgaaggtgctcaagggtctcgtggcgagcctggcaatcctgggtcccct
gggcctgcaggggcttctggtaacccagggactgatggtattcctggagccaaaggatct
gctggcgctcctggaattgctggtgcccctggcttccctgggccccgtggccctccaggt
cctcaaggtgcaactggtcctcttggccccaaaggtcaggcgggtgagcctggcattgct
ggcttcaaaggtgaacaaggccccaagggagagactggacctgctgggccccagggagcc
cctggccctgctggtgaagaaggcaaacgaggtgctcgaggagagcccggtggtgctgga
ccaattggaccccctggagagagaggtgctcctggcaaccgtggtttcccaggtcaagat
ggtctggcaggtcccaagggtgcccctggagagcgagggcccagtggcttggctggtccc
aagggagccaacggtgacccgggtcgccctggagaacctggtcttcctggagccaggggt
cttaccggtcgccctggtgatgctggtcctcaaggcaaagttggtccttctggagcccct
ggtgaagacggtcgccccggacctcctggtcctcagggagctcgtgggcagcctggtgtc
atgggtttccctggccccaaaggtgccaacggcgagcctggcaaagctggcgagaagggt
ctggctggtgctcctggtctaagaggtcttcctggcaaagatggtgagacaggagccgca
ggaccccccggccccagtggacctgctggtgaacgaggcgagcaaggcgctcctggacca
tcagggttccagggacttcctggccctcctggtcccccaggtgaaggtggaaagcaaggt
gaccagggtattcctggtgaagctggagctcccggccttgtgggtcctcggggcgagcga
ggtttcccaggtgaacgtggctctcccggtgctcagggcctccagggtccccgaggcctc
cccggcactcctggtactgatggtcccaaaggtgcatctggcccagatggcccccctggg
gctcagggccctccaggtctacagggaatgcctggcgagagaggagcagctgggattgct
gggcccaagggagacagaggcgatgttggcgagaaaggtccagagggagcccctgggaag
gacggcggccgaggtcttactgggcccattggacccccaggcccagcaggggccaatggc
gagaagggagaagttggacctcctggcccttcgggaagtactggagctcgaggtgccccg
ggtgaacgcggagagactgggccacctggacctgctggattcgctggccctcctggtgct
gatggccaacctggtgccaagggtgatcaaggagaagccggacagaaaggagatgctggt
gcccccggcccacaaggcccctcgggagcccctgggccccagggtcctactggagtgact
ggtcctaagggagcccgaggtgcccaaggtcccccgggagccaccggattccctggagct
gctggccgagttggacccccgggttctaatggcaaccctggacccgctggtcctcccggt
cctgctggaaaagatggtcccaaaggtgctcgaggagacagtggtccccctggcagagct
ggtgaccccggtcttcaaggtcctgcaggagctcctggcgagaaaggagaacctggagat
gatggtccctctggttctaatggtcccccaggtccccaggggctggcgggtcaaaggggc
attgttggtctgcctggtcagcgtggtgagagaggattccctggccttcctggcccatcg
ggtgagcctggcaagcagggtgcacctggatcatctggagacagaggtcctcctggtccc
gtggggcctcctggcctgacagggcctgcaggtgaacctggacgagagggcagccctggt
gctgatggaccccctggaagagatggtgcagctggagtcaagggtgatcgtggtgagact
ggagcattgggcgcccctggagctcctgggcccccaggctctcctggccctgctggccca
actggcaaacaaggagacagaggagaggctggtgcacaaggtcctatgggcccctcagga
cctgctggagcccgtgggattgcaggccctcaaggcccccgaggtgacaaaggagaatct
ggagagcctggcgagaggggactgaagggacaccgaggctttactggactgcagggtctg
cctggccctccgggtccttctggagatcagggtgcttctggtcctgctggtccttctggc
cctagaggtccacctggccctgttggtccctctggcaaagacggctctaatggaatccct
ggccccattgggcctccaggtccccgtggacgctcaggagaaacaggccctgctggtcct
ccaggaaatcccggtccccctggccctccaggtcctcctggtcctggcatcgacatgtca
gcctttgctggcttagggcagagagagaagggccccgaccccctgcagtacatgcgggcc
gacgaggcagacagtacattgagacagcacgacgtggaggtggacgccacactcaagtca
ctgaacaaccagattgagagcatccgcagccccgatggctcccgcaagaaccctgctcgc
acctgccaagacctgaaactctgccaccccgagtggaagagcggggactactggattgat
cccaatcagggctgcaccttggacgccatgaaagttttctgcaacatggagaccggcgag
acttgcgtctaccccaacccggcgacggtgcctcggaagaactggtggagcagcaagaac
aaggagaagaagcacgtttggtttggagagaccatgaatggtggcttccacttcagctat
ggcgacggcaacctggctcccaacaccgctaacgtccagatgactttcctccgtctactg
tccaccgagggctcccagaacatcacctaccactgtaagaacagcatcgcctacctggat
gaagcggctggcaacctcaagaaggccttgctcatccagggctccaacgatgtagagatg
agggccgagggcaacagcaggttcacatacactgccctgaaggatggctgcacgaaacac
accggtaagtggggcaagactgtcatcgagtaccgatcacagaagacctcccgccttccc
attattgacatcgcacccatggacatcggaggggctgaacaggaatttggtgtggacata
gggcctgtctgcttcttgtaa
DBGET
integrated database retrieval system
