Mus pahari (shrew mouse): 110335531
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Entry
110335531 CDS
T05929
Symbol
Ddx39b
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03013
Nucleocytoplasmic transport
mpah03015
mRNA surveillance pathway
mpah03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110335531 (Ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
110335531 (Ddx39b)
03015 mRNA surveillance pathway
110335531 (Ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110335531 (Ddx39b)
03041 Spliceosome [BR:
mpah03041
]
110335531 (Ddx39b)
Enzymes [BR:
mpah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110335531 (Ddx39b)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110335531 (Ddx39b)
Spliceosome [BR:
mpah03041
]
Complex C
Other components
EJC/TREX
110335531 (Ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110335531 (Ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110335531
NCBI-ProteinID:
XP_021073362
Ensembl:
MGP_PahariEiJ_G0020513
LinkDB
All DBs
Position
18:3169907..3181737
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtggacaatgagctcttggactacgaagacgacgaggtggagaca
gcggctggggcagatgggaccgaggctcccgccaagaaagacgtcaagggctcctatgtg
tccatccacagctctggcttccgagatttcctactcaagccagagctgctccgggccatc
gttgactgtggctttgagcatccatcagaggtccagcatgagtgcatcccgcaggccatt
ctggggatggatgtcctgtgccaggccaagtcaggcatgggaaaaacagcagtgtttgtc
ctggccacactgcagcagctggagcctgttaccgggcaggtgtctgtgctggtgatgtgt
cacactagggagctggcttttcagatcagcaaggaatacgagcgcttctctaagtacatg
ccgaatgtcaaggtggcagtgttttttggcggtctttctatcaagaaggatgaagaggtg
ctgaagaagaactgcccacatatcgtcgtggggactcctggccgaattctagccctggct
cgaaataagagcctgaacctcaaacacattaaacactttatcttggacgagtgtgacaag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgcccagtctgccgc
aagttcatgcaagatcctatggagatcttcgtggatgacgagaccaagttgacgctgcac
gggttgcagcaatactacgtgaaactgaaggacaacgagaagaaccggaagctctttgat
cttctcgatgtcctcgagttcaaccaggtggtgatctttgtgaagtccgtgcagcgctgc
atcgccctggcccagcttctagtggaacagaacttcccagccattgctatccaccgtgga
atgccccaggaggagaggctctctcggtatcagcagttcaaggattttcagcggaggatt
cttgtggctaccaacctgtttggccgaggcatggacattgagcgtgtgaacattgctttc
aactatgacatgccagaggactcggacacctacctgcacagggtggccagagcgggccgg
tttggcaccaagggcttggccatcacatttgtgtcagacgagaacgatgccaagatcctg
aatgacgtgcaggaccgtttcgaggtcaacatcagcgagctgcccgacgagatcgacatt
tcctcctacattgagcagacacggtag
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