Mus pahari (shrew mouse): 110335576
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Entry
110335576 CDS
T05929
Symbol
Msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah01524
Platinum drug resistance
mpah03430
Mismatch repair
mpah05200
Pathways in cancer
mpah05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110335576 (Msh6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
110335576 (Msh6)
09162 Cancer: specific types
05210 Colorectal cancer
110335576 (Msh6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
110335576 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpah03400
]
110335576 (Msh6)
DNA repair and recombination proteins [BR:
mpah03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110335576 (Msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
110335576
NCBI-ProteinID:
XP_021073444
Ensembl:
MGP_PahariEiJ_G0020941
LinkDB
All DBs
Position
18:53608390..53627166
Genome browser
AA seq
1359 aa
AA seq
DB search
MSRQSTLYSFFPKSPALGDTKEAAAGASRRGAAASGASASRGRDAAWSEAEPGSRPAAVS
ASSPEAKDLNGGSRTAAAQAVPPSSCDFSPGDVVWAKMEGYPWWPCLVYNHPFDGTFIRK
KGKSVRVHVQFFDDSPTRGWVSKRMLKPYTGSKSKEAQKGGHFYSSKSEVLRAMQRADEA
LSKDQVQRLQLAVCDEPSEPEEEEEEKTEVHEAYLSDKSEEDGHNESEEEEAQANVQGPR
RSSRKVKKRRVISDSESDIGGSDVEFKPDTKQEGSSDDASSGVGDSDSEDLGTFGKGAPK
RKRAMVAQGGLRRKSLKKETGSAKRATRILSETKSTLSAFSAPQNSESQTHVSAGGNDSS
GPTIWYHETLEWLKPEKRRDEHRRRPDHPEFNSTTLYVPEDFLNSCTPGMRKWWQFKSQN
FDLVIFYKVGKFYELYHMDAVIGVSELGLIFMKGNWAHSGFPEIAFGRFSDSLVQKGYKV
ARVEQTETPEMMEARCRKMAHVSKFDRVVRREICRIITKGTQTYSVLDGDPSENYSRYLL
SLKEKEEDTSGHTRVYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYPPVQILFEKGN
LSTETKTILKGSLSSCLQEGLIPGSQFWDATKTLRTLLEGGYFTGNGDSSTVLPLVLQTM
TSESDSVGLTPGEESQLALSALGGIVFYLKKCLIDQELLSMANFEEYFPLDSDMVSTVKP
GAVFTKASQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCAPL
CSPSAISDRLDAVEDLMAVPDKVTEVADLLKKLPDLERLLSKIHNVGSPLKSQNHPDSRA
IMYEETTYSKKKIIDFLSALEGFKVMCKIAGLLDDVADGFKSKTLKQVVTLQTKSPKGRF
PDLTTELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLDKQRSRI
GCKSIVYWGIGRNRYQLEIPENFATRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAE
ERRDTSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSQGGDGPMCRPEILLP
GEDTYPFLELKGSRHPCITKTYFGDDFIPNDILIGCEEESEENGKAYCVLVTGPNMGGKS
TLIRQAGLLAVMAQLGCYVPAERCRLTPVDRVFTRLGASDRIMAGESTFFVELSETASIL
RHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSKSVC
VRLGHMACMVENECEDPSQETIAFLYKFTKGACPKSYGFNAARLANLPEEVIQKGHKKAR
EFERMNQSLQLFREVCLATEKPTINGEAIHRLLALINGL
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgacagagcaccctgtacagcttctttcccaagtccccggccctcggcgacacc
aaggaggccgcggccggggcctcccgcagaggtgccgctgcctctggagcctccgcttcc
cgcggccgggatgcggcctggagcgaggctgaacccgggtcccggcccgcggcggtatcc
gcctcgtcgccggaggcaaaggatctcaacggagggtcgcggacggccgccgcgcaggcc
gtgccccccagttcttgtgacttctcaccaggtgatgtggtttgggctaagatggaaggt
tacccctggtggccctgcctggtgtataatcatccctttgacggaaccttcatccggaag
aaagggaaatctgtgcgtgtccatgtgcagttttttgatgacagtccaacaaggggctgg
gttagcaaaagaatgttaaagccatatacaggttccaagtcaaaggaagcccaaaaggga
ggccatttctacagttcaaagtctgaagtactcagagcaatgcagcgtgcagatgaggcc
ttaagtaaagatcaggttcagaggctgcagctggcagtgtgtgatgagccttcagagccg
gaggaggaggaggaggagaagacagaggtgcatgaggcttatttatctgataagagtgaa
gaggatggtcacaatgagagtgaagaggaagaagcacaggctaatgttcaggggcctagg
cgaagcagccggaaagtcaagaagcgaagggtcatctcagactcggagagtgacattggt
ggctctgatgtagaattcaagccagacactaagcaggaaggaagcagtgatgacgcgagc
agtggagttggggacagcgatagtgaggacctgggcacctttggcaaaggtgctccaaag
cggaagagagccatggttgctcagggtggacttagaaggaaaagtctgaagaaggaaaca
ggctcagccaaacgagcaactcgcattttgtcagaaaccaagagtaccttgagcgctttt
tctgctcctcagaattctgaatcccagacccacgtcagtgcaggaggtaacgacagtagc
ggacccactatttggtatcacgaaactttagaatggcttaagccagaaaagagacgagat
gagcacaggagacgccctgatcaccctgagtttaattccacaacactgtatgtgcctgaa
gatttcctcaattcctgcactccagggatgaggaagtggtggcagttcaagtctcagaac
tttgatcttgtcatcttttataaggtggggaagttttatgaattgtatcacatggatgct
gttattggagtcagtgagctggggctgatattcatgaagggcaactgggcccattctggt
tttccagagattgcctttggccggttctcggattccttggtgcagaagggctataaggta
gcacgagtggaacagaccgagactccagaaatgatggaggcacgatgccggaagatggca
catgtgtctaagtttgatagagtggtgagaagggagatttgtaggatcattaccaagggc
acacagacctatagtgtgctggatggtgatccctctgagaactacagtaggtatcttctt
agcctcaaagagaaggaggaagatacttctggtcacactcgtgtatatggtgtctgcttt
gttgacacttcactgggcaagtttttcataggccagttttctgatgaccgccactgttcc
agatttaggactctagtggcacactatcctccagtacaaattttgtttgagaaaggaaat
ctctcaacagaaaccaaaaccattctaaagggctcactgtcatcttgtcttcaggaaggt
ctcataccaggttcccaattttgggatgccactaagactttgcgaacactccttgaagga
gggtacttcactggtaatggagacagcagtacagtgctgcctctggtgcttcaaacgatg
acctcggagtcagattctgttgggttgacaccaggagaggagagtcaattggctctctct
gctctaggtggtattgttttctacctcaaaaaatgcctgattgatcaggagcttttgtca
atggctaattttgaagagtatttccctttggattctgacatggtcagcacagtaaagccc
ggtgctgtctttactaaagccagtcagcgaatggtgctagacgcagtgacattaaacaac
ctggagattttcctgaatgggacaaatggctctactgaaggtaccctgctagagaggctg
gatacttgccataccccctttggcaagcggctcttaaaacagtggctttgtgcccctctc
tgcagcccttctgctatcagtgaccgtttagatgctgtagaagacctgatggctgtgcct
gacaaagtcactgaagttgcagaccttctaaagaagctgccagatcttgagaggctactg
agtaagattcataatgttgggtctcccctgaagagccagaaccatccagatagcagggct
ataatgtacgaagaaacgacatacagcaaaaaaaagatcattgattttctctctgctcta
gaaggattcaaagtaatgtgtaaaattgcagggcttctggacgatgttgcggatggtttt
aagtccaaaacccttaagcaggttgttactctacagacaaaaagtcctaaaggccgtttt
cctgacctgaccacagaactgaaccgatgggatacagcctttgaccatgagaaggctcga
aagactggactcattactccaaaagcagggtttgactccgattatgaccaagcacttgct
gatataagagagaatgaacagagcctcctggagtacttagacaaacagcgtagtcggatc
ggctgcaagagcatagtgtactggggaattggtaggaaccgttaccagttagagattcca
gagaattttgctacccgtaatcttcctgaagaatatgagttgaaatctactaaaaaaggc
tgtaagcgatactggactaaaacgattgagaagaaattagctaatcttataaatgctgaa
gaacgcagggatacatctttaaaggactgcatgcggcgtctgttctataatttcgataag
aattacaaggactggcagtctgctgtagagtgcattgcagtgttggatgtcttactgtgc
ctggctaactatagtcaaggaggagatggtcctatgtgtcgcccagaaattctgttacca
ggagaagacacatatccattcttagagcttaaagggtcacgacatccctgcattacaaag
acttattttggagacgattttattcctaatgacattctaataggctgtgaggaagaatca
gaggaaaatggcaaagcctattgtgtgcttgtgactggaccaaatatggggggcaaatct
acactcataagacaggctggcctgttggctgtgatggcccagctgggctgttacgtgcct
gctgagaggtgcaggctcacgcccgttgacagagtgtttactaggcttggtgcctcagac
agaataatggcaggggagagtacattttttgttgagttgagcgaaactgctagcatactt
aggcatgcaacagcacattctttggtacttgtggatgaattaggaagaggcactgcaact
tttgatgggacagcgatagccaatgcggttgttaaagaacttgctgaaactataaagtgc
cgaacattgttttctacacactatcattcattggtagaagattattctaaaagtgtttgt
gtgcgcctaggacatatggcatgtatggtagaaaatgagtgtgaggaccccagccaggaa
actattgctttcctctataagttcactaagggagcttgtcctaagagctacggctttaat
gcagcaaggcttgctaatcttccggaggaggttattcagaagggacacaaaaaagcaaga
gaatttgagaggatgaatcagtcattacaactatttcgggaagtttgtctggctactgaa
aagccgactataaacggtgaagctatccataggttgctggctttgattaatggattgtag
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