Mus pahari (shrew mouse): 110335649
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Entry
110335649 CDS
T05929
Symbol
Lsm2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2 isoform X1
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03018
RNA degradation
mpah03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110335649 (Lsm2)
09123 Folding, sorting and degradation
03018 RNA degradation
110335649 (Lsm2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110335649 (Lsm2)
03041 Spliceosome [BR:
mpah03041
]
110335649 (Lsm2)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110335649 (Lsm2)
mRNA degradation factors
5'-3' decay
Lsm complex
110335649 (Lsm2)
Spliceosome [BR:
mpah03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110335649 (Lsm2)
Complex C
U2 snRNP components
110335649 (Lsm2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
110335649
NCBI-ProteinID:
XP_021073586
Ensembl:
MGP_PahariEiJ_G0020485
LinkDB
All DBs
Position
18:2906092..2909795
Genome browser
AA seq
130 aa
AA seq
DB search
MVFWGEPPSPGESSRAPAGQGTRALHFRAGDADFVRLFYSFFKSLVGKDVVVELKNDLSI
CGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDA
ARKEALQQKQ
NT seq
393 nt
NT seq
+upstream
nt +downstream
nt
atggttttttggggggaacctccaagtccaggagaaagctcacgggcgccggcggggcag
gggacgcgagccttgcacttccgtgcgggagacgcggactttgtgaggctcttctactcc
tttttcaagtcccttgtgggcaaggatgtagtcgtggaactcaagaatgacctgagcatc
tgtggaaccctccactctgtggaccagtacctcaatatcaaactaaccgacatcagtgtc
acagaccctgagaaataccctcacatgttatcagtcaagaactgcttcatcaggggctca
gttgtccgctatgtgcagctgccagcagatgaggtggacacacaactgctacaggatgca
gcaaggaaggaagcccttcagcagaagcagtga
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integrated database retrieval system
