Mus pahari (shrew mouse): 110336025
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Entry
110336025 CDS
T05929
Symbol
Smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03082
ATP-dependent chromatin remodeling
mpah04714
Thermogenesis
mpah05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110336025 (Smarca2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
110336025 (Smarca2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
110336025 (Smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpah03021
]
110336025 (Smarca2)
03036 Chromosome and associated proteins [BR:
mpah03036
]
110336025 (Smarca2)
Transcription machinery [BR:
mpah03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110336025 (Smarca2)
Chromosome and associated proteins [BR:
mpah03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
110336025 (Smarca2)
Chromatin remodeling factors
BAF complex
110336025 (Smarca2)
PBAF complex
110336025 (Smarca2)
GBAF(ncBAF) complex
110336025 (Smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
110336025
NCBI-ProteinID:
XP_021074107
Ensembl:
MGP_PahariEiJ_G0014334
LinkDB
All DBs
Position
1:138178164..138351250
Genome browser
AA seq
1597 aa
AA seq
DB search
MSTPTDPAAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPLSTM
GSADFPQEGMHQLHKPMDGIHDKGIVEDVHCGSMKGTSMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPLGAPEHVSSPISGGGPTPPQMPPSQPGALIPGDLQAMNQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQQQQQQQQQQQQPQQQQQQ
PQQQTQAQPQQQQQQQQQPALVSYNRPSGPGQELLLSGQSTPQKLSTPAPSGRPSPAPPA
AAQPTATAVPGPSVQQPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEILQEREYRLQAR
IAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSK
AYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSVAGKI
QKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQT
DEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGEPALGPDGEPIDESSQMSDL
PVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESESDYEEEDEEEETSR
QETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISERVE
KQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLN
GPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFNVLLTTYEYI
IKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWA
LLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKE
VESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLR
KICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFC
QMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGL
NLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLN
VDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLF
MRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKIFGRGSRQRRD
VDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNVDKDPVKEDVEKAKKRRGRPPA
EKLSPNPPKLTKQMNAIIDTVINYKDRCNVEKVPCNSQLEIEGSSSGRQLSEVFIQLPSR
KELPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSI
VLQSVFKSARQKIAKEEESEEESNEEEEEDDEEESESEAKSVKVKIKLNKKEEKGRDTGK
GKKRPNRGKAKPVVSDFDSDEEQEENEQSEASGTDNE
NT seq
4794 nt
NT seq
+upstream
nt +downstream
nt
atgtccacacccacagacccagctgcaatgccccatcctgggccctccccggggcctgga
ccctctcctggaccaattctggggcctagtccaggaccaggaccatccccgggttctgtg
cacagcatgatgggtcccagtccgggacctcccagcgtctcacatcctctgtcaacgatg
ggctctgcagacttcccacaggaaggcatgcaccaattacataagcccatggatgggata
catgacaaggggattgtagaagatgtccactgtggatccatgaagggtaccagcatgcgc
ccaccacacccaggaatgggccccccacagagccccatggaccagcacagtcaaggttat
atgtcaccacatccgtctcctttgggagccccagagcacgtctccagccctatatctgga
ggaggcccaaccccaccccagatgccaccgagccagccaggggcactcatcccaggagat
ctgcaggccatgaaccagcctaacagaggtccctcgcctttcagtcctgtgcagctgcat
cagcttcgagctcagattttagcttacaaaatgttggccaggggccagcctctccctgaa
actctgcagcttgcagtccagggaaaaaggaccttgcctggcatgcagcagcagcagcag
caacagcagcagcagcagcagcaacagcagcagcagcagccccagcagcagcaacagcag
ccccagcaacagacgcaggcacagccccagcagcagcaacaacagcagcagcagccagct
cttgttagctacaatcgaccatctggccccgggcaggagctgctgctgagtggccagagc
actccgcagaagctttctacacctgcacccagtggccgaccttcacccgcacccccagcc
gccgcccagcccacagccacagcggtgcccgggccctccgtgcagcagcctgccccaggg
cagccatctccagtcctgcagctgcaacagaagcagagccgcatcagccccatccagaaa
ccgcaaggcctggacccggtggagatcctgcaggaacgagagtacagacttcaggctcgc
atagctcataggatacaagaactggaaagtctgcctggttccttgccaccagacttacgt
accaaagcaaccgtggaactgaaagcacttcgcttactcaacttccagcgtcagctgaga
caggaggtggtggcctgcatgcggagggacaccaccctggagacggccctcaactccaaa
gcatacaaacggagcaagcgccagaccctgcgcgaggcacgcatgacagagaaactggag
aagcagcagaagatagaacaggagaggaaacgccggcagaaacaccaggaatacctgaac
agtattttgcaacatgcaaaagattttaaggaatatcaccggtctgtggctgggaagatc
cagaagctgtccaaagcagtggcgacttggcatgctaacacggaaagggagcagaagaag
gagacggagcggattgagaaggagaggatgcggaggctgatggctgaagatgaagagggc
tacaggaagctcattgaccaaaagaaagacagacgtctcgcctacctattgcagcagacc
gatgagtatgtcgccaatctgaccaacctggtttgggagcacaagcaggcccaagcagcc
aaagagaagaagaagaggagaaggaggaagaagaaggctgaagagaatgcagagggaggg
gagcctgccctgggaccagatggagagccaatagatgagagcagccagatgagcgacctg
cctgttaaagtgacacacacagagactggcaaggtcctctttggaccggaagcacccaaa
gcaagtcagctggatgcctggctggagatgaatcctggttacgaagttgcacccagatct
gacagtgaagagagtgaatctgactatgaggaagaggatgaagaagaagagaccagtaga
caggaaacagaggagaagatactgctcgatcccaacagcgaagaagtttccgaaaaggac
gccaagcagatcattgagactgcgaagcaggacgtggacgatgaatacagcatgcagtac
agtgccagaggctcccagtcctactacacggtggctcacgccatctcggagagggtggag
aagcagtctgccctcctcattaacggcaccctaaagcattaccagctccagggcctggaa
tggatggtttccctgtataataacaatctgaacggaatcttagctgatgaaatggggcta
ggcaagaccatccagaccattgcactcatcacgtatctgatggagcacaaaaggctcaat
ggtccctacctcatcatcgtccccctctcgactctgtctaactggacatatgaatttgac
aaatgggctccttctgtggtgaaaatttcttacaagggtacccctgccatgcgacgctcc
cttgttccccagctacggagtggcaaattcaatgtcctcctgactacttacgagtacatt
ataaaagacaagcacattcttgcaaagattcggtggaaatacatgattgtggatgaaggc
caccgaatgaagaatcaccactgcaaactaacccaggtcctgaacacacactatgtggcc
cccaggcggatccttctgactgggaccccactgcagaataagcttcctgaactctgggcc
ctcctcaacttcctcctccctacaatcttcaagagttgcagcacatttgagcagtggttt
aatgctccatttgccatgaccggcgaaagggtggacctgaatgaagaagaaacgattctg
atcatcaggcgtctacacaaggtgttgagaccctttttactgaggaggctgaagaaagag
gtcgagtctcagcttccggaaaaggttgagtatgtgatcaagtgtgacatgtcagctctg
cagaagattctataccgccacatgcaagccaagggaatcctcctcacggacgggtctgag
aaggataagaaggggaaaggaggtgccaagacacttatgaacaccatcatgcagctgaga
aaaatatgcaaccacccatatatgtttcagcacattgaggagtcctttgctgaacacctg
ggctattcgaatggggtcatcaatggggctgagctgtatcgggcctcaggaaagtttgag
ctgcttgatcgcattctgcccaaactgagagcaactaaccaccgcgtgctgcttttctgc
cagatgacgtcactcatgaccattatggaggattactttgcttttcggaacttcctgtac
ctgcgccttgacggcaccaccaagtctgaagatcgtgctgctttgctgaagaaattcaat
gaacctgggtcccagtatttcattttcttgctgagcacacgagcagggggccttggctta
aatcttcaggctgcagacacagtggtcatcttcgacagcgactggaatcctcaccaggat
ctgcaggcccaagaccgagctcaccgcattggccaacaaaatgaggtccgggtgctaagg
ctctgcaccgttaacagtgtggaggaaaagattctcgcggctgccaagtacaagctgaac
gtggatcagaaggttatccaggcaggcatgtttgaccagaagtcatccagccacgagcgg
agggcattcctgcaggccattctggagcatgaagaggagaatgaggaagaagatgaagta
ccagacgatgagaccctgaaccagatgattgctcgccgggaggaagagtttgatcttttt
atgcgcatggacatggaccggcggagggaggatgcccggaacccgaagcgcaaaccccgc
ttgatggaggaagacgagctgccctcctggattatcaaggatgacgctgaagtggaaagg
ctcacctgtgaggaagaggaggagaagatatttgggaggggttctcgccagcgccgggat
gtggactacagcgatgccctcactgagaagcaatggctcagggccatcgaagacggcaat
ttggaagaaatggaagaggaggtacggcttaagaagagaaaaaggcgaagaaatgtggat
aaagaccccgtgaaggaagatgtggaaaaagcgaagaaaagaagaggccgccctccggct
gagaagttgtcaccaaatcccccaaaactcacgaagcagatgaacgccatcatcgatact
gtgataaactacaaagacaggtgtaacgtggagaaggtgccctgtaattctcagttggaa
atagaaggaagcagttcagggcgacagctcagtgaagtcttcattcagttaccttccagg
aaagagttaccagaatactatgaattaattaggaagccagtggacttcaaaaagataaag
gaacgaatccgtaatcataagtaccggagcctgggagacctggagaaagatgtcatgctc
ctctgtcacaatgcacagacattcaacttggaaggatcccagatctacgaagactccatt
gtcctacagtcagtgtttaagagtgctaggcagaaaattgccaaagaagaagagagtgag
gaagaaagcaatgaagaagaggaggaagacgatgaagaggaatcggagtcggaggcgaaa
tctgtgaaggtgaaaatcaagctgaataaaaaggaagagaaaggccgggacacagggaag
ggcaagaagcggccaaaccgaggcaaagccaaacccgtcgtgagcgattttgacagcgac
gaggagcaggaagagaacgaacagtcagaagcaagtggaactgataacgagtga
DBGET
integrated database retrieval system
