Mus pahari (shrew mouse): 110336269
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Entry
110336269 CDS
T05929
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110336269
Enzymes [BR:
mpah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110336269
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
110336269
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
110336269
NCBI-ProteinID:
XP_021074365
Ensembl:
MGP_PahariEiJ_G0021545
LinkDB
All DBs
Position
19:76997203..77101471
Genome browser
AA seq
1795 aa
AA seq
DB search
MNGKRNLKLLGAEEKPKLSFTYKRRSERLRSFHFLERAIDLRSPAVGCARTRYLQRRPAP
SAPAAQASGSLHGAGPGSRSGLRVQVESTDGSKNGFLKIMSHLILEIMSEADYSSLFNDF
VESEFFLIDGDSLLITCVCDMSLKPGQSLHFFYLVERYLLNVIXQFAIVFFKDAEYAYFN
VPGLLTLRTALILHLQKNTTIEVWTKFSNCLSEEWNICLGQSCPYFLILADEGLNDLQTH
LFNFVVIQAWAAKVNIVLFSGQTSDILRLYAYFMQSSHQMQMFFKENKRVIMTVYQRLIQ
QLEKYREMALTPLFGDLKFNDMEEEVCETVSLLKQLWPEGSDIRRVFCVTSCSLFLEMYH
CYLENREKGASEEMSEVQQKTDNCLTLKDVEDFCKLHCLSVAFLLHLPLSQRTRSRFITS
GWIQDLKTVLKMKRWCEYFILKNVDMFESWSLNLLHLSDLSDEPLLRNIAFYYENENEKG
LDLNVGDVIMNEYVHLWDTVSELVRKFDVGKPIPLRTTKVHFLKKTPSPIKESSQEMMPN
LGFIPISCNLVDEFTGDILKDLPFLTSDDPIVTSLVKHKEFDELVHWHSHRPLSDDYDKS
RTEVGDRSDPYYLKKLQKYHRFQRFYGESLESVTSKTITTQGPKPKKDCIKSKSSKAHET
KAEIIKRENKKRLIAEEEQKEEQKWNALSFSIEEEMRKNLDSGMKKLEEFLKSCKSGSVK
AQVERVGLQACLKAWKEHCQSEGEAMKDLSIAVNMMKRIHSLLDKHSELLQEADQKLIAR
CLKYLGFYELADSLYPTQDAADDIKTKKKNKYSVGIGPARFQLQYMGHYLIREERKDPDP
RVQDFIPDTWQRELLDVVDNYESAVIVAPTSSGKTYASYYCMEKVLKESNEGVVVYVAPT
KALVNQVAATVEYRYTKNMPAGESLCGVFTREYRHDALNCQVLITVPACFEILLLAPHHQ
NWVKRIRYVIFDEVHCLGGEIGAEIWEHLLVMIRCPFLALSATISNPQHLTEWLQSVKRY
WKQVDSTMEERTVSQRKATSRGSYYKDQAQARQSYKVRLVLYGERYNDLEKYLCSVRQGD
VCFDHFHPCAALTTDHIEKYGFPSDLTLSPRESIQLYDTMCQVWKSWPQAQNLCPENFTQ
LKNKIVIKKLDARKYEESLKEEFTNWVKNGNEEEARMVLKKLSPDYHDHSGRMLNFFPCL
VEKLRKMEKLPALFFLFSLDTVEECAKSACKFLEEKQEEKRSPKADKEAHTMANELRKVK
KSLEKQKTIDEKGQKSSRRLDQSVMHETEHDYLLKRLEKNLEIPKDCTYANQKAIDDESL
QVVFKRVKFERKGETLKRLAERGIGYHHRSMSAKEKQLVEILFRKGFIRVVTATGTLALG
INMPCKSVVFAQNSVYLDALNYRQMSGRAGRRGQDLLGDVYFFDIPLPKIRKLIKSKVPE
LRGQFPLSVSLILRLMLLATKADDLEDGKAKALSVLKHSLLSFKRPRAIDMLKLYFLYSL
QFLVKEGHIDQEGNPTGFAGLVSHLHYHEPSNLVFISFLVKGLFHKLCQPTSEGSKRFSE
DVMEKLVLVLANLFGRKYIPAKFYEVNSKFYQSKVFLDDLPEDFSNALLEYNMQVTEDFA
SFLLIVSRLADMKQEYQLPLSKIEFTGKECEDSPLVSHLMNCKEGRVAVSPFVCLSGNFD
VDLLRLGVPNHVILHTIGINYTQAPVLWPHKLDSQGRKMPLNAYALDFYKHGSLIGLVQD
NRIHPGEAYNLLKDFSLTIKSISVSLRELCENEEDNVVLAFEQLSTSFQEKFELV
NT seq
5388 nt
NT seq
+upstream
nt +downstream
nt
atgaatggaaaacgaaacttaaagcttctgggagcagaagagaaaccgaaactatccttc
acttataaaaggcggtctgagagactcagaagtttccactttttggagcgagcgattgat
ctcaggtctcccgcggtcggctgtgcgcgcactcgttacctgcagcgcagaccagcgccc
tcggcacctgctgcgcaggccagcggttctctgcacggggcaggtccaggttcccggtct
gggcttcgcgttcaggttgaaagcacagatggcagcaaaaatgggtttttaaaaataatg
tcacatttaatcttggaaattatgtcagaggctgactattccagcttattcaatgatttt
gttgaatctgagttctttctgattgacggtgactccttgctcatcacatgtgtgtgcgac
atgtcacttaagccaggacagagtctccacttcttctacctggttgagcgctacctgttg
aatgttattnagcagtttgccatagttttcttcaaggatgctgagtatgcatacttcaat
gtccctggactcctgacactgagaactgctttaattctgcatcttcagaagaataccacc
attgaagtttggactaagttttctaactgcttgtcagaagaatggaatatttgcttgggt
cagagttgcccatatttcttgatactggctgatgaaggcctgaacgacctgcaaacacat
cttttcaactttgtagttattcaggcctgggcagcaaaggtcaatattgtgctcttctca
gggcaaacatctgacatccttcgtctttatgcatactttatgcaaagctcgcatcaaatg
cagatgtttttcaaggagaataagagagtgattatgactgtttaccaaagactgattcaa
cagttggaaaaatacagagagatggctttaacacctctgttcggagatttaaaattcaat
gatatggaagaggaggtatgtgaaactgtatctctgctgaaacaactctggccagaagga
tctgacatccgacgtgtcttttgtgtcacctcatgctctctcttcttggaaatgtaccac
tgctacttagaaaacagagagaaaggagcatctgaggagatgtcggaagtccaacagaaa
acagataattgcttaaccctgaaggacgtggaagacttttgtaagcttcattgcctcagt
gtggcttttctgctccatttacctctctctcagagaactcgctcaagattcatcacttct
ggttggattcaggacctcaagactgtcttaaaaatgaaaaggtggtgcgagtattttatc
ctaaagaatgtggatatgtttgaatcttggagtctgaatttacttcacctttctgactta
agtgatgagcctttgttaaggaatattgctttttactatgaaaatgaaaatgaaaaaggc
ctggatttgaatgtgggagatgtcatcatgaacgagtatgtacatctctgggacactgtg
tcagagttggtcagaaagtttgacgtgggaaaaccaattcctttgagaacaacaaaagtt
cattttcttaaaaagacaccatcaccaatcaaagaaagttcccaggagatgatgccgaat
ttaggttttattccaatatcatgtaatttagttgatgaatttactggagacattttgaaa
gacttgcctttcctaacgagtgatgaccccattgttacatcactggtaaagcataaggaa
tttgatgagcttgtgcactggcactcccacagacctctcagtgatgactatgataagtca
aggactgaagttggagacagaagcgacccctattatcttaaaaagttgcagaagtatcat
cgttttcaacgattttatggggagtcattagaatcagtgacttcaaagaccatcacaact
caaggtcctaagccaaagaaggattgtattaagtccaagagctcaaaggcacatgagacc
aaggcggaaataattaaaagagaaaataagaagaggttaattgctgaggaagaacaaaaa
gaagagcaaaaatggaatgccctgtcattttctatcgaggaggagatgagaaagaattta
gactcaggaatgaagaaactggaagagttcttgaaatcatgtaaaagtggctcagtaaaa
gctcaggttgaaagagtcgggttacaggcttgcttgaaagcctggaaggaacattgccaa
tctgaaggtgaagccatgaaagacttaagcatagctgtcaatatgatgaagagaatccac
tccttgttggacaaacactctgaacttctgcaagaagcagatcagaaactcatagccaga
tgtcttaagtatttaggattttatgagcttgcagattctttgtatccaactcaggatgca
gcagatgacataaaaacgaagaaaaagaataaatattcagttgggattgggccggctcgg
ttccaactacaatatatgggtcactatttaatacgagaagaaagaaaagaccccgacccc
agggtccaagattttattcctgacacgtggcagcgagagctcctggatgtcgtggataac
tatgagtctgcagtgattgttgccccaacatcatctggcaagacttatgcttcctactat
tgcatggaaaaggtgctgaaggagagcaatgaaggcgtggttgtgtacgttgcaccaaca
aaggctcttgttaatcaagtggcagcaactgttgaatatcgttataccaaaaatatgcca
gctggtgaatctctatgtggtgtttttaccagggaatatcgccatgatgccctcaactgt
caggtgcttataactgtgcctgcctgctttgaaattctgctactagctcctcatcaccaa
aactgggtgaagaggatcagatacgttatatttgatgaggtccattgtcttggtggagaa
attggagcagaaatctgggagcatctccttgtcatgatccgatgtccctttttggccctt
tcagctaccattagcaaccctcagcatctcactgagtggcttcagtcagtaaagcggtac
tggaaacaagtagacagtaccatggaggaaagaactgtgtcccaaagaaaggctacctcc
cgtggcagctattacaaagaccaagcccaagccagacagtcatacaaagtgagacttgtc
ctctatggagagagatacaatgacctagagaagtatttgtgttctgtgagacagggcgat
gtttgctttgaccattttcacccctgcgctgcactaaccacagatcacattgaaaagtat
ggatttccttctgatctcaccctttcaccccgagaaagcatacagctgtatgacactatg
tgccaggtctggaagagttggccccaggcccagaacctatgtccagagaacttcactcaa
cttaagaataaaatagtcattaaaaagctggatgctagaaaatatgaagagagcttaaag
gaagaattcacgaattgggttaaaaatgggaacgaggaggaggccaggatggtgctgaag
aaactgagtcctgattaccatgaccactcagggaggatgctgaacttctttccatgtctt
gttgagaagctaaggaaaatggagaagttgcctgcactattctttttgtttagtttagat
actgtagaagaatgtgctaaaagtgcttgcaaattcctggaggaaaaacaggaggaaaaa
agatctcctaaagctgacaaagaggctcataccatggctaacgaacttcggaaagttaaa
aaatctctggagaaacaaaagacaatagatgaaaagggccagaaatcttccagaagactg
gatcaaagcgttatgcatgaaacagaacacgattacctcctcaagcgtctggagaagaat
ctggagattcccaaggactgcacatatgctaatcagaaggcaatagatgatgagtcattg
caggtggtgtttaagcgggtaaaattcgaacgaaaaggtgaaacactgaagcggttggca
gaaaggggcattggctatcaccaccgctccatgagtgctaaagaaaagcagttggtcgaa
attctcttcaggaaaggattcatcagggtggtgacagctactggaacacttgctttggga
atcaacatgccctgtaaatctgtggtttttgcacaaaactcagtctatctggatgcttta
aattacagacagatgtctggtcgggccggaagacgagggcaagacctgttgggtgatgtc
tacttctttgatattccactgcccaaaataagaaaactcataaaatccaaagttcctgag
ctgagaggacagtttcccctcagtgtctcactcatcctaagactcatgttgctggctacc
aaggcggatgacttagaggacggcaaggcaaaggcattgtcagtgctgaagcattcattg
ttatctttcaaacgaccccgagccatagacatgttaaagctttacttcttatattctttg
cagttcctggtgaaagagggacatatagatcaagaaggtaatcctacagggtttgctggt
cttgtctcccatttacattaccacgaaccttctaatctcgtgtttatcagttttcttgta
aaaggccttttccataaactttgtcagccaacaagtgaaggctcaaaacgtttttctgaa
gatgtaatggaaaagctggttttggtattggcaaatctttttggaagaaaatatattcca
gccaagttctacgaggtcaactccaagttttatcaatcaaaggtgttccttgatgacctt
cctgaggacttcagtaacgccctgcttgagtacaacatgcaagtgacagaagactttgcg
tcctttctgctcattgtatcccgattggctgatatgaaacaggagtatcaactccccttg
tcaaaaatcgagttcacaggtaaagaatgtgaagattcgcctcttgtgtctcacttgatg
aactgcaaggaaggaagggtggcagtttcaccctttgtctgtctgtctggaaactttgat
gtggatttgcttcgtctgggagtgccaaatcatgtcattctacacacaattggtatcaat
tacacacaagccccagtgctgtggccacacaaattggacagtcaaggaagaaaaatgcca
cttaatgcctatgcacttgatttctataagcatggatcccttattggattagtccaggac
aataggatacatccaggggaagcttataatctgttgaaagatttttcccttaccattaaa
tctatcagtgtctccttgcgtgaactgtgtgaaaatgaagaagacaatgttgttttagcg
tttgaacaattgtctacatcttttcaagagaagtttgaattagtgtga
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integrated database retrieval system
