Mus pahari (shrew mouse): 110336392
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Entry
110336392 CDS
T05929
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110336392 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110336392 (Xab2)
03041 Spliceosome [BR:
mpah03041
]
110336392 (Xab2)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110336392 (Xab2)
Spliceosome [BR:
mpah03041
]
Complex B
Other components
Prp19-related factors
110336392 (Xab2)
Complex C
110336392 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_14
TPR_2
TPR_12
TPR_8
TPR_19
Suf
TPR_15
TPR_1
TPR_7
TPR_21
TPR_16
Motif
Other DBs
NCBI-GeneID:
110336392
NCBI-ProteinID:
XP_021074586
Ensembl:
MGP_PahariEiJ_G0021247
LinkDB
All DBs
Position
19:complement(22801968..22813568)
Genome browser
AA seq
855 aa
AA seq
DB search
MVVMARVPRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKIFFVRSDASREEXAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgagttccgcgtcccgagcggccggaccttgtttttgaagaagaa
gaccttccctatgaggaagaaatcatgaggaaccagttctccgtcaaatgctggctccgc
tacatcgagttcaaacagggagcccccaagccccgactcaaccagttgtacgagcgggca
ctcaaactgcttccctgcagctacaaactctggtaccgctatctgaaggcacgccgggcg
caggtgaaacatcgatgtgtgactgaccctgcctatgaagatgtcaacaactgtcatgag
agggcctttgtgttcatgcataagatgccacgcctgtggttagactactgccagtttctc
atggaccaggggagggtcacacatacccgccgcaccttcgaccgcgccctcagggcactg
cccatcacacagcactctcgcatctggcccctgtatctgcgtttcctgcgctcccaccca
ctgcctgagactgctgtgcgaggctaccggcgcttcctcaagctgagtcctgagagtgct
gaggagtacatcgagtatctcaaatccagtgaccggctagacgaggctgcacagcgcctg
gccaccgtggtgaatgatgagcgctttgtatccaaggctggtaaatccaactaccagctg
tggcacgagctgtgtgaccttatctcccagaatccggacaaggtacagtctctcaatgtg
gatgccataatccgtggtgggctcacccgcttcactgaccagctgggcaagctgtggtgc
tccctggcagattactatatccgcagcggccacttcgaaaaggctcgggatgtgtatgag
gaggccatccgcacggtgatgaccgtgcgggacttcacccaggtgttcgacagctatgcc
cagtttgaggagagcatgattgcagcgaagatggagactgcctctgaactggggcgtgag
gaggaggatgatgtggacctggagctgcgcctggcccgcttcgaacagctcatcagccga
cggcccctgcttctcaatagtgtccttctgcgccagaacccacaccatgtccacgagtgg
cacaagcgtgtagccctccatcagggccgtcctcgggagattatcaacacatacacagag
gctgtgcagacagtagaccccttcaaagccacgggcaagccccacacactgtgggttgca
tttgccaagttttacgaagacaatggacagctggatgatgctcgagtcatcctagagaag
gccacgaaggtgaatttcaagcaggtggacgacctggcgagtgtgtggtgccagtgtggg
gagctggagctcaggcatgagaattacgacgaggccttaaagctgcttcggaaagccacg
gctctgcctgcccgccgggctgagtactttgatggttcagaacctgtgcagaaccgagta
tacaagtcgctgaaggtgtggtccatgctcgccgacttggaggaaagcctgggcacgttc
cagtcaaccaaggccgtgtatgaccggatcctggacctgcgtatagccacgccacagatt
gtcattaactatgccatgttcctggaggagcacaagtactttgaggagagcttcaaggca
tatgagcgtggcatctcactgttcaagtggcccaatgtttcagacatctggagcacctac
ctgaccaaattcatctcgcgctatgggggccgcaagctggagcgggcacgggatctcttt
gagcaggcactcgatggctgcccaccgaaatatgccaagactttatacctgctctacgca
cagctggaggaggagtggggccttgcccgccatgccatggctgtgtatgaccgtgcgacc
agggcagtggagccagcacagcagtatgacatgtttaacatctacatcaagcgggctgct
gagatctatggtgtcacccacactcgtggcatctaccagaaggccattgaggtgctgtct
gatgagcatgcccgtgagatgtgcctgcggtttgcggacatggagtgcaagcttggtgag
atcgaccgcgcccgagccatctacagcttctgctcccagatctgtgatccccggacaact
ggggcattctggcaaacatggaaggactttgaggtccggcacggcaatgaggacaccatc
agggagatgctgaggatacggcggagtgtgcaggccacttacaacactcaggtcaacttc
atggcttcacagatgctcaaggtgtcgggcagtgccacaggcaccgtgtctgacctggct
cctgggcagagcggcatggatgacatgaagctgctggaacagagagcagaacagctggca
gctgaggcagagcgggaccagccgcccagggcccagagcaagatcttctttgtgaggagt
gatgcatccagggaggaantggcagagctggctcagcaggccaaccctgaagagatccag
ctgggcgaggatgaggatgaggacgagatggacctggagcccaatgaagtccgactggag
cagcagagcgtgccagctgccgtgttcgggagcctgaaggaagactga
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