Mus pahari (shrew mouse): 110336435
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Entry
110336435 CDS
T05929
Symbol
Sox1
Name
(RefSeq) transcription factor SOX-1 isoform X1
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mpah03000
]
110336435 (Sox1)
Transcription factors [BR:
mpah03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
110336435 (Sox1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
110336435
NCBI-ProteinID:
XP_021074651
Ensembl:
MGP_PahariEiJ_G0021286
LinkDB
All DBs
Position
19:30859569..30863624
Genome browser
AA seq
394 aa
AA seq
DB search
MYSMMMETDLHSPGGAQAPTNLSGPAGAGGGGGGGGGGGGGGGGGGTKANQDRVKRPMNA
FMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHPD
YKYRPRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGVGAAAVGQRLESPGGAA
GGGYAHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHPHAHPAHPHPHHPH
AHPHNPQPMHRYDMGALQYSPISNSQGYMSASPSGYGGIPYGAAAAAAAAAGGAHQNSAV
AAAAAAAAASSGALGALGSLVKSEPSGSPPAPAHSRAPCPGDLREMISMYLPAGEGGDPA
AAAAAAAQSRLHSLPQHYQGAGAGVNGTVPLTHI
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcatgatgatggagaccgacctgcactcgcccggcggcgcccaggcgcccacg
aacctctcgggcccggccggggcgggcgggggcggcggtgggggcgggggcggcggcggc
ggcggcggcggcgggggcaccaaggccaaccaggatcgggtcaagcggcccatgaacgcc
ttcatggtgtggtcccgcggacagcggcgcaagatggcccaggaaaaccccaagatgcac
aactcggagatcagcaagcgcctgggggccgagtggaaggtcatgtccgaggccgagaag
cggccgttcatcgacgaggccaagagactgcgcgcgctgcacatgaaggagcacccggat
tacaagtaccggccgcgccgcaagaccaagacgctgctcaagaaggacaagtactcgctg
gccggcgggctgctggcggccggcgcgggtggcggcggcgcggccgtggccatgggcgta
ggcgtgggcgtcggggcggcggccgtgggccagcgcctggagagtccaggcggcgcggcg
ggaggaggctacgcgcatgtcaacggctgggctaacggcgcctaccccggctcggtggcc
gcggcggctgcggccgcggccatgatgcaggaggcacagctggcctacgggcagcaccca
ggcgcgggcggcgcgcacccgcacgcgcacccggcgcacccgcacccgcaccatccgcac
gcgcatcctcacaacccgcagcccatgcaccgctacgacatgggcgcgctgcagtacagc
cccatctccaactctcagggctacatgagcgcgtcgccttcgggctacggaggcatccct
tacggcgccgcggccgccgccgccgccgctgcgggcggcgcgcaccagaactcggctgtg
gcggcggcggcggcggcggcagccgcgtcgtcgggtgccctgggcgccctcggttctctg
gtcaagtcagagccgagcggcagtccgccggccccggcgcactcgcgggcgccgtgcccc
ggggacctgcgcgaaatgatcagcatgtacctgcccgccggcgagggtggtgacccggcc
gcggcagcggctgcggcggcccaaagccggctgcactcgctgccacagcactaccagggc
gcgggcgcgggcgtcaacggcacggttcccttgacgcacatctag
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