Mus pahari (shrew mouse): 110336868
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Entry
110336868 CDS
T05929
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03013
Nucleocytoplasmic transport
mpah03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110336868 (Upf1)
03015 mRNA surveillance pathway
110336868 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110336868 (Upf1)
Enzymes [BR:
mpah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110336868 (Upf1)
5.6.2.5 RNA 5'-3' helicase
110336868 (Upf1)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110336868 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
110336868 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
110336868
NCBI-ProteinID:
XP_021075270
Ensembl:
MGP_PahariEiJ_G0021607
LinkDB
All DBs
Position
19:complement(84992593..85014102)
Genome browser
AA seq
1124 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGPGGA
GAGGAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFV
WKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHS
QVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKI
HQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKR
YRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGA
KQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSN
IFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVE
KITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREK
DFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSYYKE
QKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVYDRSSQGR
PSNMYFQTHDQISMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKTK
TGRGGRQKNRFGLPGPSQTTLPNSQASQDVASQPFSQGALTQGYVSMSQPSQMSQPGLSQ
PELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagacactcaccttcttggacactgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagttcaccgacttcaccctc
cccagccagacgcagacgccccccggcggccccggcggcgcgggaggcccgggcggagcg
ggcgcaggcggcgcggccggccagctcgacgcgcaagttggaccagagggcattttgcaa
aatggggctgtggatgacagtgtggccaagaccagccagctgctagctgagctgaacttc
gaggaagatgaagaggacacatactacactaaggacctcccagtccacgcctgcagttac
tgcggaatccatgatcctgcctgcgtggtttactgtaataccagcaagaagtggttctgc
aatggccgaggaaatacttctggcagccacattgtgaatcacctcgtgagggcaaaatgc
aaggaagtgacgctgcacaaggacgggcctctgggcgagaccgtgctggagtgctacaac
tgtggatgccgcaacgtcttcctgctgggcttcatccctgcaaaggccgactctgtggtg
gtgctgttgtgcaggcagccctgtgccagccagagcagcctgaaggacatcaactgggac
agctcacagtggcagcccctgatccaggaccggtgcttcctgtcatggctggtcaagatt
ccctctgagcaggagcagcttcgagcacggcagatcactgcacagcagatcaacaagctt
gaagagctctggaaggaaaatccttcagccactctggaggacctggagaagccaggtgtg
gacgaggagccgcagcacgtgctcctgcggtacgaggatgcttaccagtaccagaacatc
ttcgggccactggtcaagctggaggctgactatgacaagaagttgaaggagtcacagact
caagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgccttcttc
actttgcccaagactgactctggtaatgaggatttagtcataatttggttaagagacatg
cggctcatgcagggtgacgagatctgtctgcggtacaaaggggacctggcgcccctgtgg
aaggggattggccacgtcatcaaggttcctgataattatggtgatgagattgctattgag
ctccgcagcagcgtgggtgcccctgtggaagtgacccacaacttccaagtggattttgtg
tggaagtcaacctcttttgataggatgcagagtgcactgaagaccttcgctgtggacgag
acctctgtgtcagggtatatttaccacaagctgctgggccacgaggtggaggatgtggtc
atcaagtgccagctgccaaagcgcttcactgctcaggggcttcctgacctcaaccactcg
caggtgtatgctgtgaagaccgtgctgcagagaccactcagcctcatccagggccctcca
ggcacaggcaagaccgtgacatcagccactattgtctaccaccttgctcggcagggcaat
gggcctgtgctggtctgtgctccaagtaacattgctgtggaccagctcacggagaagatc
caccagacaggactgaaggtcgtacgcctctgtgccaagagccgtgaggccattgactcc
ccagtgtccttcctggctttgcacaaccagatcaggaacatggacagcatgcctgagctg
cagaagctgcagcagctaaaggatgagacaggcgagctgtcatctgcagatgagaagcgg
taccgggcccttaagcgtacagctgagagagaacttctcatgaatgcagatgtcatctgc
tgcacatgtgtgggtgctggtgacccgaggctggccaagatgcagttccgttccatcctc
attgacgagagcacccaggccactgagcctgagtgcatggtgcctgtagtccttggggcc
aagcagctgatcctcgtgggtgaccactgccagctgggcccagtggtgatgtgcaagaag
gcagccaaggccgggctgtcacaatcgctcttcgagcgcttggtggtgctgggcatccgg
cccatccgtctgcaggtgcaataccgcatgcaccctgcactcagcgcctttccgtccaac
atcttctacgagggctcattgcagaatggcgtcactgcagcggatcgtgtcaagaaaggc
tttgacttccagtggccacagcctgacaagcctatgttcttctacgtgacgcagggccag
gaggagattgccagctctggcacatcctacctcaacaggacggaggcagccaacgtggag
aagataactacgaagctgttgaaggcgggtgcaaagcctgaccagatcggcatcatcaca
ccctacgagggccagcgctcctacttggtgcagtacatgcagttcagcggctccctgcac
acaaagctctaccaggaagtggagattgccagtgtggacgccttccagggccgggagaag
gacttcatcattctgtcctgcgtgcgcgccaatgaacatcagggcattgggttcctaaat
gatccccggcgtctgaatgtggctctcaccagggcaagatatggcgtgatcattgtgggt
aacccaaaggcgctgtcgaagcagcccctgtggaaccacctgctgagctactacaaggaa
cagaaggcgctagtggaagggccgctcaacaacctacgggagagcctcatgcagttcagc
aagcctcgaaaacttgtcaacactgtcaacccgggggcccgcttcatgactactgccatg
tacgatgcccgtgaggccatcatccctgggtctgtctatgaccgcagcagccagggccgg
ccctcgaacatgtacttccagacccatgaccagattagcatgatcagcgcaggccccagc
cacgtggctgccatgaacatccccattcccttcaacttggtcatgcctcccatgccacca
cctgggtacttcggacaggccaatgggccggctgctggccgaggcaccccaaaaaccaag
actggccgtgggggccgccagaagaaccgctttgggcttcctgggcccagccagaccact
cttcccaatagccaggccagccaggatgtggcctcccagcccttctcacagggtgccctc
acacagggttacgtgtccatgagccagccctcccagatgagccagcctggcctctcccag
ccagaactgtcccaggacagctacctcggtgatgagtttaaatcacagattgacgtggca
ctctcacaagactccacataccagggagagcgggcataccagcacggcggggtcaccggg
ctgtcccagtactag
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integrated database retrieval system
