Mus pahari (shrew mouse): 110336965
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Entry
110336965 CDS
T05929
Symbol
Cic
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah05017
Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
110336965 (Cic)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mpah03000
]
110336965 (Cic)
Transcription factors [BR:
mpah03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
110336965 (Cic)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
110336965
NCBI-ProteinID:
XP_021075358
Ensembl:
MGP_PahariEiJ_G0021215
LinkDB
All DBs
Position
19:20773915..20801546
Genome browser
AA seq
2515 aa
AA seq
DB search
MKPMKKACPGLAGSASGSKSPPATRAKALRRRGAGEGDKPEEEEEEEAQPQEQAGPEEAE
EGEEEEAERDPGAEGPHPELQPNDPTPGLAEDSKGDGEAGRWEPSLSRKTATFKSRAPKK
KYVEEHGTGNVGVVGAPEERERTPEDASALGVPPRPPTSTRSSSTDTASEHSADLEDEPP
EACAPGPWPSTGTSEGYDLRQLRSQRVLARRGDGLFLPAVVRQVRRSQDLGVQFPGDRAL
TFYEGVPGGGVDVVLDVTPPPGALMVGTAVCTCVEPGVAAYREGVVVEVATKPAAYKVRL
SPGPSSLAGPPGTLPQAQQPLHHREPEEAVWVTRSSLRLLRPPWEPRALLRKHPAGPEEE
QAEPGPTLPPCPSSVEPKQPEDAEVSNISFGSNLGTHCEGGEEKHPPSLGTPVLLPLPPP
QLLSPPPKSPAFGGPGRPSEQPSPCQEGSQGGSRSSSVASLEKGAAPAARARTPLTAAQQ
KYKKGDVVCTPNGIRKKFNGKQWRRLCSRDGCMKESQRRGYCSRHLSMRTKEMEGLADSG
PGGTGRPAGVAAREGSTEFDWGDETSRDSEASSVAARGDSRPRLVAPADLSRFEFDECEA
AVMLVSLGSSRSGTPSFSPVSTQSPFSPAPSPSPSPLFGFRPANFSPINASPVIQRTAVR
SRHLSASTPKAGVLTPPDLGPHPPPPAPRERHSSGILPTFQTNLTFTVPISPGRRKTELL
PHPGTLGASGAGGGGAAPDFPKSDSLDSGVDSVSHTPTPSTPAGFRAVSPAVPFSRSRQP
SPLLLLPPPAGLTSDPGPSVRRVPAVQRDSPVIVRNPDVPLPSKFPGEVGTAGEARAGGP
GRSCRETPVPPGVASGKPGLPPPLPAPVPITVPPAAPTAVAQPMPTLGLASSPFQPVAFH
PSPAALLPVLVPSSYPSHPAPKKEVIMGRPGTVWTNVEPRSVAVFPWHSLVPFLAPSQPD
PSVQPSEAQQPASHPVASNQSKEPAESAAVAHEQPPGGTGGADPGRPPGAVCPESPGPGP
PLTLGGVDPGKSLPPTTEEEAPGPPGEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRR
TQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTV
SKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPASLGLAG
GHKETRERSMSETGTAAAPGVSSELLSVAAQTLLSSDTKAPGSGPCGAERLHTVGGPGSA
RPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPTSYSGPKPSPQYGAPGSFAAPGEGGTL
ATSGRPPLLPSRASRSQRAASEDMTSDEERMVICEEEGDDDVIADDSFGTTDIDLKCKER
VTDSESGDSSGEDPEGNKGFGRKVFSPVIRSSFTHCRPTLDPEPPGPPDPPAAFSKGYGP
TPSSSSSPASTSVSVSTSFSLGSGTFKTQESGQGSTAVPLRPPPPGAGGPATPSKATRFP
PTDSATFRRKRPESVGSLEAPGPSVIAAPPSGGGNILPTLVLPPSKEDREGTRVPSAPAP
SLAYGAPAAPLCRPAATMVTNVVRPVSSTPVPIASKPFPTSGRAEVSSNDTVGARTEMGT
GSRVPGGSPMGVSLVYSDKKSAAATSPAPHLVAGPLLGTVGKAPATVTNLLVGTPGYGAP
ASPAVQFIAQGAPGSATPAGSGASTGSGPNGPVPLGILQPSALGKAGGITQVQYILPTLP
QQLQVAPAPAPAPGTKAAAPSGPAPTTSIRFTLPPGTSTNGKVLAATAPTAGIPILQSVP
SAPPPKAQSVSPVQATPSGGSAQLLPGKVLVPLAAPSMSVRGGGAGQPLPLVSSPFSVPV
QNGAQQPSKIIQLTPVPVSTPSGLVPPLSPATMPGPTSQPQKVLLPSSTRITYVQSAGGH
TLPLGTSSACSQTGAVTSYGPASSVALGFTSLGPSGPAFVQPLLSAGQAPLLAPGQVGVS
PVPSPQLPPACTAPGGPVITAFYPGSPAPTSAPLGPPSQAPPSLVYTVATSTTPPAATIL
PKGPPASATATPAPTSPFSSATAGSMTYSLVAPKAQRPSPKAPQKVKAAIASIPVGSFES
GTTGRPGPTPRQSSDSGVAREPAVPESELEGQPTPPVPPPPTETWPPTARSSPPPPLPAE
ERPGTKGPETASKFPSSSSDWRVPGLGLESRGEPPTPPSPAPATGPSGSSSGSSEGSSGR
GAGDTPERKEVTSSGKKMKVRPPPLKKTFDSVDNRVLSEVDFEERFAELPEFRPEEVLPS
PTLQSLATSPRAILGSYRKKRKNSTDLDSAPEDPTSPKRKMRRRSSCSSEPNTPKSAKCE
GDIFTFDRTGTETEDVLGELEYEKVPYSSLRRTLDQRRALVMQLFQDHGFFPSAQATAAF
QARYADIFPSKVCLQLKIREVRQKIMQAATPTEQPPGAEAPLPGPPPTGMAATPVPTPSP
AGGPDPTSPGSDSGTAQVAPPLPPPPEPGPGQPGWEGAPQPSPPPSGPSTAATGR
NT seq
7548 nt
NT seq
+upstream
nt +downstream
nt
atgaagcccatgaagaaggcgtgccctggccttgcaggttccgccagtggcagcaagtcc
ccaccagctaccagggccaaggctttgaggcggcgaggggctggggagggtgacaagccg
gaggaggaagaggaggaggaggcacagccacaggagcaggcagggccagaagaggctgaa
gagggtgaggaagaggaggctgagcgggaccctggagctgaaggaccacatccagagctg
cagcccaatgatcctaccccaggcttagctgaggactctaagggggatggggaggcaggc
cgctgggagccctcactcagtcgcaagacagccacattcaagtctcgagcccccaagaag
aagtatgtggaggagcacggcactggcaacgttggtgtggtcggagcccctgaagagcgg
gagcggacgcctgaggacgccagtgccctaggtgtgcctcctcggccacccacctccact
cggtcctcctctactgacacggccagtgagcactcagccgacctggaggacgagccccct
gaggcttgtgctccaggcccctggccctctacaggcaccagtgaaggctatgacctgcgg
cagctgaggtctcagcgggtgctggctcggcggggtgatggtctcttcctgcctgctgtc
gtgcgccaggtgcgccggagccaggacttgggtgtgcagttccctggggaccgtgccttg
actttctatgaaggagtacccggtggtggtgtggacgtcgttttggatgtcacgccacct
ccaggtgcactgatggttggcacggctgtctgcacttgtgtggagcctggtgtggctgcc
taccgagagggtgtagtggtggaggtggccactaaaccagctgcctataaggtccgccta
agccctggccccagctccctcgcaggcccaccaggcactctgccacaagcccaacagcca
ctacaccaccgtgagcccgaggaggctgtctgggtaactcgctctagcctgcgcctgctt
cggcctccctgggaacccagggccttgctgaggaagcaccctgcaggcccagaggaggag
caggctgagcctgggcccactttgcctccttgtccttcttccgtggagccgaagcaacct
gaggatgctgaggtctccaacatcagcttcggtagcaacctggggactcactgcgagggg
ggagaagagaagcacccaccatccctgggcaccccagtcctgctcccactgcctccaccc
cagctcctgtcaccacccccgaagtccccagcctttggtggccctggccgccctagtgag
cagccttcaccatgccaggaagggagccagggtggcagccgcagtagcagtgtggcctcg
ctggagaagggagctgcaccagcagcccgtgctcgcacgccattgacagctgcccaacag
aagtacaagaagggcgacgtggtctgcacacccaatggcattcgaaagaagtttaatggc
aagcagtggcgccggctgtgctctcgggatggctgcatgaaggagtcccagcggcgcggg
tactgctcgcgccacctgtccatgagaaccaaagagatggagggcctggcagacagtggg
ccaggtgggaccgggcggcctgcgggtgtggcagcccgtgaaggaagcactgagtttgac
tggggcgatgagacttcgagggacagtgaagccagcagtgtggcagcccggggagactcc
cgcccacgcctagtggcgcctgccgacctgtcacgcttcgagtttgatgagtgtgaggcg
gctgtgatgttggtgtcactgggcagctcccgctcaggcacgccctctttctctccggtc
tccacacagtcacccttctccccagccccctctccctcaccctcgccgctcttcggcttc
cgccctgccaacttcagccccatcaatgcctcacctgtcatccaacgcactgctgttcgc
agccgccacctgagcgccagcacccctaaggcaggcgtgctgacaccaccagacctgggc
ccccatccaccgccacctgcccctcgtgagcgccattcctctggcatcctacccaccttc
cagaccaacctaacctttactgtgcccattagccctgggcggaggaagacagaactgctg
ccccatccagggacattgggggcctccggagcaggaggtgggggagccgccccagacttc
cccaagagtgacagcttagactctggagtggactccgtgtcccatacacctaccccctcc
acaccggctggcttccgagctgtgtcacccgctgtgcccttctctcgctcccgccagcct
tcaccattgctgctgttgcccccacctgctggactcacctcagatccagggccctctgtg
cgaagggtacccgctgtgcagcgggactcacctgtcattgtccgcaaccccgatgtgcca
ctaccttccaaattccctggagaggtgggcactgccggtgaggcacgggccgggggacct
ggacggagttgccgtgagaccccagtgccccctggggtggccagcgggaaacctggcctg
cctccacctctgcctgcccctgtgcccatcactgtgcctccagccgcaccgactgctgtg
gcccagccgatgcccaccttgggcctggcttcttcacccttccagcccgtggcctttcac
ccttcacctgctgccctgttgccagttctagtgccgagcagttatcccagccaccctgcc
cccaagaaggaagtcatcatgggcaggcccggaacagtgtggacaaatgtggaacctcgt
tctgtggctgtgttcccctggcactccttagtccccttcctggcacccagccagcccgac
ccctctgtgcagcctagtgaggcccagcaacctgccagccaccctgtggcctccaaccag
agcaaagaacctgctgagtctgctgctgttgctcatgagcagccaccaggagggacgggg
ggtgctgaccctggacggccccctggagcagtttgccctgagagcccagggcctggacct
ccacttactttgggtggtgtggatcctggtaaaagtctccctcccaccactgaggaggag
gctcctggccctccaggagagccccggctggacagtgagaccgagagtgatcacgatgat
gccttcctctccatcatgtctcctgagattcagctgcctctgccacctggaaagcgccgc
acccagtctctgagtgccttgcccaaggaacgagactcctcttctgaaaaggatggacga
agtcctaacaagcgggagaaggaccatatccgtcggcccatgaatgccttcatgatcttc
agcaagcggcaccgggccttggtccaccagcggcaccccaaccaggacaaccggactgtc
agcaagatcctgggagagtggtggtatgccctggggcccaaggagaagcagaaataccac
gatctggccttccaggtgaaagaggcccacttcaaggcccacccagattggaaatggtgc
aacaaggaccgaaagaagtccagctcagaggccaagcctgcgagcctgggtctggcagga
gggcacaaggagacgcgggaacggagcatgtcggagacgggaactgctgctgcccctggg
gtgtcttctgagctcctgtccgttgccgcccagacactcttgagctcggacaccaaggct
ccagggagtggcccctgtggagcagaacgactacatacagttgggggacctggctcagct
cgacccagagccttctcccacagtggggtgcacagtcttgatggtggggaagtagacagc
caagcactacaagaactgacccagatggtttctggccccacatcatactccggcccaaag
ccttccccccagtatggtgctccaggatcttttgcagctcctggggaaggaggtaccttg
gccactagtgggcggcctccactgttgccctcccgagcctctcgttcccagcgtgcggcc
agtgaggacatgaccagtgatgaggagcggatggtcatctgtgaggaagaaggggatgat
gatgtcatcgctgatgacagctttggcaccaccgacattgatctcaagtgcaaggaacgg
gtgactgacagtgagagtggagacagctctggggaggacccagagggtaacaagggcttt
ggccgtaaggtgttctcacctgtcatccgctcctcctttacccattgccgtccaaccctg
gaccctgagcctccagggcccccggatccacctgcagccttcagcaaaggctacggtccc
accccatcatcctcctcttcacctgcttccacctcagtctcagtctccacctccttttca
ctgggctctggaacctttaagacccaggagtctggtcagggcagcacagcggtgccacta
cggcccccgccccctggagccgggggcccagcaacaccttccaaggccactcggtttcct
cctacggattctgccacctttcggcgcaagagacctgaaagtgttggtagccttgaagca
ccgggcccctcagtcattgcagcgcctcccagtgggggaggaaacattctgccaacactg
gttctgcctccgagcaaggaggatcgggagggtacacgagtgccctcggccccagcccca
tcactggcttatggggctccagcagcccctctgtgccgccctgctgccaccatggtcacc
aacgtggtacggcctgtcagcagcactcctgtgcccattgcctctaagccctttcccacc
tctggtcgggctgaggtatcttcaaatgacacagtaggtgccaggactgaaatgggcacg
ggatcccgggtgcctgggggctccccaatgggtgtcagtttagtgtattcagataagaag
tcagcagcagccacctcaccagctccacatttggtagctggacctttattgggcactgtg
gggaaggcacctgctactgtcaccaacttgctggtaggcaccccaggctatggggctcct
gcatcgcctgctgttcagtttattgcccagggagccccaggcagtgcaacccctgcaggc
tcaggagcaagtactgggagtggccccaatgggccagtacccctgggcatcctgcagcca
agtgccctaggcaaggctgggggaatcacacaggtgcagtacatcctgcccacactgccc
cagcagcttcaagtggcacctgccccagcaccagcccctgggaccaaggcagcagctccc
agtggccctgcacccaccaccagcatccgtttcaccctccctccgggcacctcgaccaac
ggcaaggtcctggctgccactgcacccactgctggcatccctatcctgcagtccgtaccc
tcagccccaccccctaaagcccagtcagtttctcctgtccaggccacaccttcaggtggc
tcagcccagctgctgcctgggaaggtgctagtccccctggctgcccctagcatgtcagtt
cgaggtggaggggctggtcagccactgcccctggttagctcgcctttctcagtacctgtc
caaaatggtgcccaacaacctagcaagattatccagctgactcctgtgcctgtgagcaca
cctagtggcctggtaccacccctgagcccagccacaatgccgggacccacatcacagcct
cagaaggtcctgttgccctcttccacaagaatcacctatgtacagtcagcaggcgggcac
actctgcctctaggtaccagctctgcatgcagtcagactggagcagtaacctcatacggg
cccgccagctctgtagctctgggctttacgtcgttggggcccagtggtcctgcctttgta
cagcctctgctctcagcaggccaagctcctttgctggctcctggccaggtgggcgtgtca
cctgtgcctagcccccagttgcctcctgcctgtacagcccctggaggtcctgtcataaca
gcattttaccctggcagccctgcacccacttcagcacccctgggcccaccttcccaagct
ccaccaagcctggtctacactgtagccaccagtaccaccccacctgctgctaccattctg
cccaagggcccaccagcctctgccactgccactccagcccctactagtcctttctctagt
gccacagcaggctccatgacctacagcttagtggctcccaaagctcagcgacccagccca
aaagctccccagaaagtaaaggcagccattgccagcattcctgtggggtcttttgaatcg
ggcactactgggcggcctggacctacaccccgacagtcttcagactctggcgtagcccga
gagccagctgtcccagaatcagaacttgaggggcagcccacacccccagtccccccaccc
cccacagagacctggcctcccactgcccggagcagtcccccaccccccttgcctgctgag
gagcgacctggcactaaaggccctgagactgccagcaaattccccagctcatcttcagac
tggcgagttcctgggctgggcctggagagtcgtggggagcctcctactcctcccagccca
gctccagccacaggccccagtggaagcagcagtggcagcagcgagggcagtagtgggagg
ggagctggggacacacccgagcgcaaggaagtgactagttctggcaagaagatgaaggtg
cggcccccgcccctgaagaagacctttgactctgtggacaacagggtcctgtcagaagtg
gactttgaagagcggtttgctgagctgccggagtttagaccagaggaggtgctgccctca
cccaccctacagtctctggccacctcgcctcgggctatccttggctcctaccgcaagaag
aggaagaattccacggacctagactcagcgcctgaagaccccacctcacccaagcgcaag
atgaggagacggtcgagctgcagctccgagcccaacacccccaagagtgccaagtgcgag
ggggacatcttcacctttgatcgcacaggtactgaaacagaggatgtgcttggggagctg
gagtatgagaaggtgccctactcatcactgcggcgcaccctggaccaacggcgggccctg
gtcatgcagctcttccaggaccatggcttcttcccatcagcccaggccacagcagccttc
caggcccgctatgcagacatcttcccatccaaggtgtgtctgcaattaaagatccgagag
gtccgccagaagatcatgcaggcagccactcccacagagcagccccctggggctgaagcc
cccctgcctggaccaccccctactggcatggctgctactcctgtccccacccccagccct
gctgggggccctgaccccacctctccaggctcggactctggcactgcccaagttgcccca
ccactgcctccacccccagagcctgggcctggacagcctggctgggagggggctccccaa
ccctcaccacctccctctggcccttccacagctgccacaggcaggtga
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integrated database retrieval system
