Mus pahari (shrew mouse): 110337235
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Entry
110337235 CDS
T05929
Symbol
Ctcf
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mpah03000
]
110337235 (Ctcf)
03036 Chromosome and associated proteins [BR:
mpah03036
]
110337235 (Ctcf)
Transcription factors [BR:
mpah03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
110337235 (Ctcf)
Chromosome and associated proteins [BR:
mpah03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
110337235 (Ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
Zf-C2H2_ZNF451_C
zf-C2H2_ZN142
zf-C2H2_7th_ZNF462
zf-met
zf-C2HE
zf-C2H2_6
Zf-C2H2_ZNF451
zf-C2H2_15
zf-WIZ
Motif
Other DBs
NCBI-GeneID:
110337235
NCBI-ProteinID:
XP_021075674
Ensembl:
MGP_PahariEiJ_G0023088
LinkDB
All DBs
Position
20:29065709..29113357
Genome browser
AA seq
736 aa
AA seq
DB search
MEGEAVEAIVEESETFIKGKERKTYQRRREGGQEEDACHLPQNQTDGGEVVQDVNSSVQM
VMMEQLDPTLLQMKTEVMEGTVAPEAEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPV
PVTVPVATTSVEELQGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQ
GELPPQEDSSWQKDPDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEV
NAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCG
RAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYAS
VEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSG
TMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHERY
ALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLLDM
HFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENGGETKKSKRGRKR
KMRSKKEDSSDSEENAEPDLDDNEEEEEPAVEIEPEPEPQPQPPPPPQPVAPAPPPAKKR
RGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEPAEGEEEEAQAATTDA
PNGDLTPEMILSMMDR
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggaaggtgaggcggttgaagccattgtggaggagtctgaaactttcattaaaggaaaa
gaaagaaagacttaccagagacgccgggaagggggccaggaagaagatgcttgccacttg
ccccagaaccagacagatgggggcgaggtggtccaggatgtcaacagcagtgttcagatg
gtaatgatggaacagctcgatcctacccttctccaaatgaagactgaagtcatggagggt
accgtggctccggaagcagaggctgcagtggacgatacccagatcataaccttgcaggtt
gtaaatatggaggaacagcccattaacataggagagcttcagcttgttcaagtacctgtt
cctgtgacggtacctgttgctactacttcagtagaagaacttcagggggcttatgagaat
gaagtgtctaaagagggccttgcagaaagtgaaccgatgatatgtcacaccttacctttg
cctgaaggatttcaggtggtgaaagtgggggccaatggagaagtggagacactagagcag
ggggagcttcctcctcaggaagactctagctggcaaaaagacccagactatcagccacca
gccaaaaaaacaaagaaaaccaaaaagagcaaacttcgttacacagaagagggcaaagat
gtggatgtgtctgtgtatgattttgaggaagaacagcaggaaggactgctgtctgaggtt
aatgcagagaaagtggtcggtaatatgaagcctccgaagccaacaaaaattaaaaaaaaa
ggtgtaaagaaaacatttcagtgtgagctttgcagttacacatgtccacggcgttcaaat
ttggatcgtcacatgaaaagccacactgatgagagaccacacaagtgccatctgtgtggc
agagcattcagaaccgtgaccctgctgaggaaccacctgaacacacacacaggtactcgt
cctcacaagtgcccagactgcgatatggcctttgtgaccagtggagaattggtgcggcat
cgtcgttataaacacactcatgagaaaccatttaagtgttccatgtgtgattatgccagt
gtagaagtcagcaaattaaaacgacacattcgctctcatactggagagcgcccgttccag
tgcagtttgtgcagttatgccagcagggacacatacaagctgaaaaggcatatgagaacc
cattcaggggaaaaaccttatgaatgttatatttgtcatgctcggtttacccagagtggt
accatgaagatgcacattttacagaagcacacagaaaatgtggccaaatttcattgtccc
cattgtgacactgtcatagcccgaaaaagtgatttgggtgtccacttgagaaagcagcat
tcctatattgaacagggcaaaaaatgtcgctactgtgatgctgtatttcatgagcgatat
gctctcatccagcatcaaaaatcacacaaaaatgagaagcgcttcaagtgtgaccagtgt
gattatgcttgtagacaggagaggcacatgatcatgcacaagcgaactcacacaggagag
aagccttatgcctgcagtcactgcgacaagaccttccgccagaaacagctccttgacatg
catttcaagcgctatcatgatcccaactttgtccctgctgcctttgtctgttccaagtgt
gggaaaacattcacccgccggaacacaatggcaagacatgcagataactgtgctggtcca
gatggcgtagagggggaaaatggaggggagacaaagaagagcaaacgaggaagaaaaaga
aagatgcgatctaaaaaagaagactcctctgatagtgaagaaaatgctgagccggatctc
gatgacaatgaggaggaggaggagcctgctgtagaaattgaacctgagccagagcctcag
cctcagcctccgcctccacctcaacctgtggccccagccccaccacctgccaagaagaga
agggggcgacctcctggaagaaccaaccagcccaaacagaaccagccaacagccatcatt
caggtcgaagatcagaatacaggtgcaattgagaacattatagttgaagtcaaaaaggag
ccagatgccgagcctgcggagggggaagaagaggaggctcaggcagccaccacagacgcc
cccaatggagacctcacgcctgagatgatcctcagcatgatggaccggtga
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integrated database retrieval system
