Mus pahari (shrew mouse): 110337248
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Entry
110337248 CDS
T05929
Symbol
Edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110337248 (Edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110337248 (Edc4)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110337248 (Edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
110337248 (Edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Prp19
DUF445
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
110337248
NCBI-ProteinID:
XP_021075700
Ensembl:
MGP_PahariEiJ_G0023100
LinkDB
All DBs
Position
20:29309624..29321746
Genome browser
AA seq
1405 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPAGGSNAESQRPSSAYNGDLNGLLVPDPLSSGDGNS
TNKPGIRTMPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALVKGKIQEEILVHIRQPEGTALNHFRRIIWCPF
IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSHNTWPVDVSQIKQGFIVVKGHSTCL
SEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQDEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGTESSHGAGALESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVTPLSTHTA
HEDFTFGESRPELGSEGLASAAHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFMT
PTASLQQISASPSSSSSSSSSSSSSSSSSSSSLTAVSAVSSSSAMDPSLPRPPEELTLSP
KLQLDGSLTINSSSSLQASPRSLLPGLLPGPADKLISKGPGQVSTAASALSLDLQEVEPL
GLPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSVPEGLIEPDSMASAASAL
HLLSPRPRQGPELSSQLGLDGSPGDGDRHGTPSLLEAALTQEVATSDSQVWPTAPDITRE
TCSTLTESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDTSAEQSDHDDEVASLASASGGFG
SKIPPPRLTSKDWKTKGSPRTSPKLKRKSKKDDGDSAVGSRLTEQQVAEPPEDWPALIWQ
QQRELAELWHNQEELLQRLCAQLEGLQSTVTDHVERALETRHEQEQRRLERALAEGQQRG
GQLQEQLTQQLSQALSSAVAGRLERSVRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTA
VEGSMRESISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQ
INDSFRLGTQEYLQQLESHMKSRKAREQEAREPVLAQLRGLVSTLQSATEQMAATVSSSV
RAEVQHQLHVAVGSLQESILAQVQRIVKGEVSVALKEQQATVTSSIMQAMRSAAGTPVPS
AHLDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQP
VLLSLIQQLASDLGTRSDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAD
PHNSLGKAARRLSLMLHGLVTPSLP
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgcgcgagcatcgacattgaggacgccacgcagcatctgcgggacatcctc
aaactggaccggcccgccggaggttccaatgccgaaagccaaaggccatccagtgcctac
aatggagacctcaatgggctcctggtccctgacccgctcagttcaggtgatggtaactca
acaaacaaacctggtatacggacaatgccacccattaacctgcaggagaagcaggtcatt
tgcctctctggagatgacagctccacctgcattgggattttggccaaggaagtggaaatt
gtggccagcagtgattctagcatttccagcaaggctcgggggagcaacaaggtgaaaatc
cagcctgtcgccaagtatgactgggagcagaaatactactatggcaacctgattgcagtg
tctaactccttcttggcatatgccattagggctgccaacaacggctcggcaatggtccgt
gtgatcagtgtcagtacttcggagcggaccctgctcaagggcttcacaggcagtgtggct
gatcttgcttttgcacacctcaactctccacagctcgcctgcctggatgaggctggcaat
ctttttgtgtggcgcttggctctggtcaagggtaaaattcaagaagagattttagtccat
atccggcagccagagggtacagcgctgaaccacttccgaaggatcatctggtgccctttc
atccccgaggagagtgaggactgttgtgaggagagcagcccgacagtggccctgctgcat
gaggaccgggctgaggtgtgggacttggatatgcttcgctccagccacaacacctggcct
gtggatgtcagccaaatcaagcagggctttattgtggttaaaggccatagcacgtgccta
agtgaaggagccctctcccctgatgggactgtcctggctaccgcaagccatgatggcttt
gtcaagttctggcagatctatattgaaggtcaggatgagccaaggtgtctgcatgagtgg
aagcctcatgatgggcggcctctttcttgcctcctgttctgtgataaccataagaaacag
gatcctgaggtcccgttctggaggttcctcattaccggcgctgaccagaatcgagagctg
aagatgtggtgcacagtgtcctggacctgcctgcaaaccattcgattctccccagatatc
ttcagctcagtgagtgtgcctcccagcctcaaagtttgcctggacctctcagcagagtat
ttgattcttagtgatgtgcaacgaaaggtcctctacgtgatggagctgctgcagaaccag
gacgagggccgcgcatgcttcagttccatctctgagttcctgctcactcaccctgtgctg
agctttggcatccaggttgtgagtcgctgccggctacggcacactgaggtcctgcctgca
gaggaggagaatgatagtctggggaccgagagttcccatggagctggtgccttggaatcc
gcagctggtgtgctcatcaagctcttttgtgtgcacactaaggcactacaagacgtgcag
atccgcttccagccacagctgaaccctgacgtggtaactccactctctacccacactgcc
cacgaggacttcacatttggagagtctcgacctgaactaggctccgaggggctagcttca
gctgcccatggttctcagcctgacctgcggcgcattgtggaactgcctgctcctgcagac
ttcctcagtctgagcagcgagaccaagcctaagttgatgacacctgatgctttcatgaca
cccactgcctccctgcagcagatctctgcatcccctagtagcagcagcagcagcagcagc
agcagcagcagcagcagcagcagcagcagcagctctctaacagctgtgtctgctgtgagc
agctcctcagccatggacccctccttgcccaggccacctgaggagctgaccttgagcccc
aagctgcagctagatggcagcctgactataaacagcagcagcagcctgcaggcaagccct
cgaagcctccttccgggcctgctcccaggcccagctgacaagttgatttccaagggacct
ggtcaggtatccactgctgcctctgcactgtccttggatttgcaggaagtggagccatta
gggctaccccaggcctccccaagtcgaactcgttctcctgatgtgatctcctcagcatcc
actgccctgtcccaggacattcctgaaatcgcatctgaggccctgtcccgtggcttcggc
tcctctgttcctgagggcctcattgagccagacagcatggcctcagctgcctcagcacta
cacttactctctcctcggcccaggcaaggccctgagctcagctctcagcttggtctggat
ggaagccctggggatggggataggcatggcaccccttccctactggaagcagccctgacc
caggaagttgcaacctctgacagtcaggtctggcctacggcacctgacattactcgtgag
acctgcagcacactgacggaaagccccaggaatggcctccaggaaaagcacaaaagcctg
gctttccacaggccaccttatcacctgctgcagcagcatgacagtcaggacaccagtgct
gagcaaagtgaccatgatgatgaggttgccagccttgcctctgcctcaggaggttttggc
agcaaaattcctcctcctcggctgacttccaaggattggaagaccaagggatcccctcgg
acgtcacctaagctcaagagaaaaagcaagaaggatgatggggattcagctgtgggatcc
cggctgacagagcaacaggtggcggagccccctgaagactggccagcactaatttggcag
cagcaaagagagctggcagagctatggcacaaccaagaagagctgctacagcgtctctgt
gcccagcttgaaggtcttcagagtactgtcacagaccatgtagagcgtgccctggagacg
cggcatgagcaggagcaacggcggctggagcgggcactggctgaggggcagcaacggggt
gggcagctgcaggagcagttgacgcagcagctatcccaggcgttgtcttcagctgtggct
gggcggctagagcgcagcgtcagggatgagatcaagaaaacagttcctccgtgtgtctcc
agaagtctggagcctgttgcaggccagctaagcaactcagtggctaccaagcttacagct
gtggaaggcagcatgagagagagcatctcgaagctcctcaaatccaagaacttaacagat
gccattgcccgagcagctgcagacacgttacagggaccaatgcaggctgcctaccgggaa
gccttccagagtgtggtactgccagcttttgagaagagttgccaggctatgttccagcaa
atcaatgacagctttagactgggcactcaggaatatctgcagcagctggagagtcacatg
aagagccggaaggcccgtgagcaagaagctagggagcctgttctggcccagcttcggggc
ctggtcagcacactgcagagtgccactgagcagatggcggccactgtgtctagcagtgtt
cgcgccgaggtgcaacaccagctgcatgtggctgtaggcagcttgcaggagtcaatctta
gcacaagtacaacgcattgtcaagggtgaagtgagtgtggcacttaaggagcagcaggcc
accgtcacttccagcatcatgcaggctatgcgttcagctgctggcacacctgtcccttct
gcccaccttgactgccaggcccaacaagcccatatcttgcagttactgcagcagggccac
ctcaatcaggccttccagcaggcgctgactgctgctgatctcaacctggtgctgtatgtg
tgtgaaactgtggacccagcccaggtttttgggcagccgccctgtccactctcccagcct
gttctcctttccctaatccagcagctagcatctgaccttggaactagaagtgacctcaag
ctcagctacttggaagaggctgtgatgcacctggaccacagtgatcccatcactcgagac
cacatgggctctgtcatggctcaggtgcgccagaagctcttccagttcctgcaggctgat
ccacacaattcacttggcaaagctgcccgccgcctcagcctaatgttacacggccttgtg
acccctagcctcccttag
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integrated database retrieval system
