Mus pahari (shrew mouse): 110337324
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Entry
110337324 CDS
T05929
Symbol
Taf5l
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110337324 (Taf5l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpah03021
]
110337324 (Taf5l)
03036 Chromosome and associated proteins [BR:
mpah03036
]
110337324 (Taf5l)
Transcription machinery [BR:
mpah03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
110337324 (Taf5l)
Coactivators
SAGA/TFTC/STAGA complex
110337324 (Taf5l)
Chromosome and associated proteins [BR:
mpah03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
110337324 (Taf5l)
STAGA complex
110337324 (Taf5l)
TFTC complex
110337324 (Taf5l)
SAGA complex
110337324 (Taf5l)
SLIK complex
110337324 (Taf5l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
TFIID_NTD2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_SPT8
RMC1_N
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_WDR19_1st
WD40_like
PEP5_VPS11_N
Beta-prop_IP5PC_F
PROPPIN
WD_LRWD1
Ge1_WD40
Nbas_N
ODR4-like
Motif
Other DBs
NCBI-GeneID:
110337324
NCBI-ProteinID:
XP_021075846
Ensembl:
MGP_PahariEiJ_G0023299
LinkDB
All DBs
Position
20:complement(47156759..47184514)
Genome browser
AA seq
589 aa
AA seq
DB search
MKRVRTEQVQVAVSCYLKRRQYVDSEGPLKQGLRLSQTPEEMAANLTVQSESGCANAVSA
APCQAEPQQYEVQFGRLRSFLTDSDSQYSREVMPLLYPLFVYLHLNLVQSGPKSTVESFY
SRFHGMFLQNASQKDVIEQLQTTQTIQDILSNFQLRAFLDNKYVVRLQEDSYNYLIRYLQ
SDNNTALCKVLAVHIHLDVQPAKRTDYQLYASGGSSRSESSSLEPPDVPSPILQNEAALD
VLQESIKRVKDGPPSLTTICFYAFYNTEQLLNTAEISSDSKLLAAGFDNSCIKLWSLRSK
KLKAEPHHVDTSRIRLACDTLEEEENEEDNTGTEMKILRGHCGPVYSTRFLADSSGLLSC
SEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPYSLYFASGSHDRTARLWSFDRTYPLR
IYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNG
KYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIR
STCCNTPADGSSGELVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgagtgcgcacggagcaggttcaggtggcagtgtcctgctacctcaaacgccgg
cagtacgtagactcagaaggccctttgaagcaaggcctcagactctcacagacccctgag
gagatggcggccaacctcacagtccaatcagaatctggttgtgccaatgcggtgtctgca
gccccgtgccaggcagagccccagcagtatgaagtgcagttcggacgcctgaggagcttt
ctcaccgattctgactcccagtacagccgagaagttatgcctctcctctaccctctcttt
gtctacctccacctcaacctggtccaaagcggccccaagagcaccgtggaaagcttctat
agccgcttccatggaatgttcctgcagaatgcaagtcagaaggatgtcatcgagcagctg
cagaccacgcagaccatccaggacattctgtcaaacttccagcttcgtgcattcctggac
aacaagtatgtagtccgtctccaggaagatagctacaactaccttatccgctacctccaa
agcgacaacaacactgccctgtgcaaggtgcttgccgtgcacattcacttagacgtgcag
cctgccaagaggacagactaccagctgtacgccagcggtggctcctcccgcagtgagagc
agcagcctggaaccgccagacgtgcccagccctattctgcagaatgaggctgccctggac
gtcttgcaggagagtatcaagcgggtcaaggatggacctccctccctcaccaccatctgc
ttctatgccttctataacacggaacagctgctgaatactgcagagatctcctccgatagc
aaactgctggctgctgggtttgacaactcctgcataaaactctggagcttgcgatccaaa
aagctgaaagcagagccccaccatgtggacacatcccgaatccgtctagcttgtgacact
ctggaggaggaggagaatgaagaagataatacaggcacagagatgaagattctgcgggga
cactgtggcccagtatacagcacacggttccttgcagacagctcagggctgctctcttgt
tctgaagatatgtccatcaggtactgggacctggggagcttcaccaacactgtgctgtat
cagggacatgcctaccctgtgtgggacgtggacatcagcccctacagcctgtactttgcc
agtggatcccatgaccgtaccgccaggctgtggtcttttgatcggacgtacccactgagg
atatatgcaggacacctggcagatgtggactgtgtcaaattccaccccaactcaaactac
ttagctacaggttccactgacaaaactgtccggctatggagtgcccagcaggggaactcg
gtgcgactcttcacaggtcaccgaggccccgtgctctccctctccttttctcccaatggt
aagtacttggcatctgctggtgaggaccagcggttaaagttgtgggacttggcctctggg
acactttttaaagaactgagaggccacacagacagcatcaccagtctggcctttagccca
gacagcggtctgattgcttctgcctccatggacaactccgttcgtgtctgggacatcaga
agcacgtgctgcaacacacctgctgacggctcttcaggtgaactcgtgggcgtgtacact
gggcagatgagcaatgtcctgagtgtacagttcatggcctgcaacctcctcctggtgact
ggaatcacacaagagaatcaagaacattaa
DBGET
integrated database retrieval system
