Mus pahari (shrew mouse): 110337328
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Entry
110337328 CDS
T05929
Symbol
Ddx39a
Name
(RefSeq) ATP-dependent RNA helicase DDX39A
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mpah03041
]
110337328 (Ddx39a)
Enzymes [BR:
mpah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110337328 (Ddx39a)
Spliceosome [BR:
mpah03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110337328 (Ddx39a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110337328
NCBI-ProteinID:
XP_021075853
Ensembl:
MGP_PahariEiJ_G0022883
LinkDB
All DBs
Position
20:8183166..8191078
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AA seq
427 aa
AA seq
DB search
MAEQDVENELLDYDEDEEPQAPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCH
TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVR
SRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCM
ALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagaacaggatgtggaaaatgagcttctggattatgatgaagatgaagagccccag
gcaccccaggagagcactccagctcccccgaagaaagatgtcaaaggatcttatgtgtcc
atccacagttcgggcttccgggactttctgctgaagccagaactcctgagagccatagtt
gactgtggctttgagcatccttcagaggtccagcatgagtgtattccccaggccattctg
ggtatggatgtcctgtgccaggccaagtctgggatgggcaagacagctgtgtttgtgctg
gccaccctgcagcagatcgagcccgtcaatggccaggtgtcagtcctggtcatgtgccac
acgagggagctggccttccaaatcagcaaggagtatgagcgcttctctaagtacatgccc
agtgtcaaggtatctgtgttctttggaggcctctccattaagaaggatgaagatgtgttg
aagaagaactgtcctcatgttgtggtgggaacaccaggccggatcctggcactcgtgcgg
agcaggagcctcaacctgaggaatgtgaagcactttgtgctagatgaatgtgacaagatg
ctggaacagctggacatgcgccgagatgtacaggagatctttcgtctgacaccccatgag
aagcagtgtatgatgttcagcgccaccctgagcaaggagatccggccagtctgcaggaag
ttcatgcaggatcctatggaggtgtttgtggacgacgagaccaagctcacactgcatggg
ctgcagcagtattatgtcaagctcaaggacagcgagaagaaccgtaagctcttcgacctc
ctcgacgtgctagagtttaaccaggtggtaatctttgtcaagtctgtgcaacgctgcatg
gccctggcccagctcctagtggaacagaatttcccagctatcgctattcaccgaggcatg
gcccaggaggagcgcctgtcccgataccagcagttcaaggacttccagcgacgaatcctg
gtggctactaatctgtttggcagaggtatggacattgaacgagtcaacatcgtcttcaac
tatgacatgccagaggactccgacacttaccttcaccgagtggctcgtgctggtcgcttt
ggtaccaagggcctggcagtcacttttgtatcggatgagaatgatgccaaaatccttaat
gatgttcaggaccggtttgaagtgaatgtggctgagcttccagaggaaatagacatctcc
acatacattgagcagagccggtaa
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