Mus pahari (shrew mouse): 110337547
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Entry
110337547 CDS
T05929
Symbol
Tarbp1
Name
(RefSeq) probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mpah03016
]
110337547 (Tarbp1)
03036 Chromosome and associated proteins [BR:
mpah03036
]
110337547 (Tarbp1)
Enzymes [BR:
mpah01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
110337547 (Tarbp1)
Transfer RNA biogenesis [BR:
mpah03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
110337547 (Tarbp1)
Chromosome and associated proteins [BR:
mpah03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
110337547 (Tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
ERAP1_C
Motif
Other DBs
NCBI-GeneID:
110337547
NCBI-ProteinID:
XP_021076181
Ensembl:
MGP_PahariEiJ_G0023326
LinkDB
All DBs
Position
20:complement(49495983..49548696)
Genome browser
AA seq
1581 aa
AA seq
DB search
MERVLADALLTQSREPGALLGALCCGEASAERAETLRLVLQRLEERGAGAGALAKAAHEV
ARDHLVPLLHASQGGGPARPRVLRAASAALRSCARLAGPELAVTLAEEALRELPGAPAVE
LLAAVAPCLRAPEDAPLLRRLGRASVELALAGDAPPAVGARLLPALARSAEPALRAAWDA
LSSAGPGAEGSTGPELLVLSALAEKLLPNHERHGDLDARLCGRFWRTVQAGLGRAQDGLT
RKQARYLLQRAVQVSAELAVDCSCDPQDTKGPSLFWWSEKKKDELLKFWENYILIMEVLE
GNQIHVIKPVLPKLNSLFEYAVSEENGCWLFHPSWHTCVYKRMFESENKILAKEGVIHFL
ELYEVKSLPYSPELSEFITGPLMDALSESCLYSRSPGQPLGSDSPLGLKLQKFLVTYTSL
LPEETKSHFLLKFIQRMADRHWCAVPVLFLSRALASIPGCKALGGEGLLALRDVLQCTMI
THQVLLRGAAQCYLLQAAMRLVDVEKVSLSDVSAFLMSLRQEESLGRGTLLWTELCDWLR
VNERYFKQSSIGGSDGQEASLNAYVKNLVQEFVKSPGWEKESSFMPDWLEARLTALMVLL
AVDVEGVKTKFREKQRTQNVLRIFLDPLLDTLGKLGTNAYMPLLRTDRCLQLLVRLLHSC
VPRGPGAQDDEVSTALQASLMSAVESVSQFVLRRLTMNELQDVADLDRCQLYLTVLSELM
SLQVKLGWKAGNPISWVISPLKNACVHHLQEAEDRQELTLSHQVQRVVSMATLAALCEAV
DQHPVLQPDSPNAEPVDRFLSALPLNHVLQKPRSDEQSVGMCPLENGSVFEESSSSKGWG
KVVAQYLHDQWVCLSYLLRKYHHLIPATESDSDVSECFLPAVEMPVQTLQAALDVLTVLP
AGSILPVFRCMEVLVPKLLTSEETLCIESFEVAWKIISSLSNTQLTFWPNLKAFVHLVFD
HEILTIAAKLKGQAYFKIKEIMCKMIEMSSIKSGVFNILIRHCCQSWLAAASGVSQGSFS
SAKDYSKLVLEACVFGTVFRRDQRLIQDVQTFIENLGQGCAANIVIENTKREDYYVRICA
IKFLCLLDGSDVSHKLFLEALAVKLLEKDESASRSRTRYHENSLQHRVKNRVWQTLLVLF
PAFDQNFLHGIIDKVFHAGFTNNQASIKYFIEWLIILILHKFPEFLPKFWACFSYGEEKI
KTSICTFLSVLSHLDIIVQNIPEKKLVLKQALTVALQWCLSHNFSVRLYALVALKKAWHL
CKTLRFEECGAWTTVIECSLSQAESMHGAGNARKNWQRIQDHFFFSTFHPLKDYCLETIF
YTLPRLSGVTEEEWIALDKFAKFTDIPSNAGSQWYLSGTALGELSPGDWSQQDQGSTLGE
ADSQSEWADVQKKIIPWGQSALESELELEFQDRAAKLGKSISRLIVVASLIDKPTNLGGL
CRTCEVFGAAVLVVGSLQCVSDRQFQHLSVSAEQWLPLVEVRPSQLMDYLQQKKAEGYTV
IGVEQTAQSSDLAQYRFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVS
GALLIWEYTRQQLLRCAEPPS
NT seq
4746 nt
NT seq
+upstream
nt +downstream
nt
atggagcgggtgttggcggacgcgcttctaacgcagagtcgggagcccggcgcgttgctg
ggcgcgctgtgctgcggggaggcgagtgcggaacgggcggagaccctgcgcctggtgctg
cagcggctggaggagcgcggcgccggcgccggcgcgctggccaaggcggcacacgaggtg
gccagggaccacctggtgcccttactgcacgcgtcccagggcggagggcctgcgaggccc
cgcgtgctccgagcggcgagtgcggcgctgcgctcgtgcgcgcgcctggcagggccggag
ctggcggtcactctggccgaagaagcgctgcgcgagctgccgggcgcgccagccgtggag
ctgctggccgccgtggcgccgtgtttacgcgcgccggaggatgccccgctgctgcgtcgc
ctggggcgtgcgtctgtggagctggcgctggccggggacgcgccgccggccgtgggagcg
cgcctgctgcccgcgctggcacggagcgcagaaccggctctgcgtgcggcgtgggacgcg
ctgagctccgcggggcccggagctgagggcagcactgggccagaactgctggtgctgagc
gcactggccgagaagctgctgcccaaccatgagcgccacggggatctcgacgcccgtctc
tgcggccgcttctggagaaccgtacaggcggggctgggccgcgcgcaggacgggctcacg
cgcaagcaagcgcgctacctgctgcagagggctgtacaggtgtctgcagaactggcggtg
gactgctcctgcgacccccaggacacaaagggtccgagcctattctggtggtctgagaag
aaaaaagatgagctcctaaagttttgggaaaactatatcttgatcatggaagttttggaa
ggaaaccagatacatgtcataaagccagtcttaccaaagctaaacagtctgtttgaatac
gcagtatcagaggagaatggctgctggctcttccatccctcctggcacacgtgcgtctat
aaaagaatgtttgaaagcgagaataaaattctggccaaagaaggcgtgatccacttcttg
gagctgtatgaagtgaaatcacttccttattccccggaactctcagagtttattactggt
ccgctgatggatgccctctcagagagctgtctgtacagcaggtccccagggcagccgctg
ggaagtgactctcccctgggattaaagctgcagaagtttctagttacttacacttccctt
cttccagaagaaacaaaaagtcatttcctgttaaagttcattcagaggatggcagacaga
cactggtgtgcagtgccggttttgttcctgtccagggctttggcaagcataccgggctgt
aaggccctgggtggagaaggtcttcttgccctcagggatgttctccagtgcaccatgatc
acacaccaggtcctcctgagaggagcagctcagtgttaccttcttcaggcagccatgcgt
ctagtggatgtggagaaagtgtctctttctgatgtctcagcttttctcatgtctctgaga
caagaggagtccttgggacgtgggaccctgctgtggacagagctctgtgactggctacgt
gtcaatgaaagatactttaagcagtcctcaattggtggctctgatggacaggaggcgtca
ttaaatgcttacgtgaagaacctagtgcaggagttcgtgaagtctcctggttgggaaaaa
gaaagcagcttcatgccagactggctggaagccaggctgacggcgctgatggtcctgctg
gctgtggacgtggaaggagtgaagaccaagttcagggaaaagcagaggactcagaacgtg
ttgagaatcttcttagaccccttgctggataccctagggaagctcggcaccaatgcctac
atgcccttgctaaggactgaccggtgcctccagctgctggtgaggttgctgcattcttgt
gtaccaagaggacccggtgcccaggacgatgaggtatccactgccctccaggcctccctc
atgtctgctgtggagagcgtgtctcagtttgtgctcaggagactcaccatgaacgaactg
caggatgtggcagatctggaccgctgccagctctacctgacggtgttgtccgagctcatg
agtctccaggttaagctgggctggaaagcaggcaaccccatcagctgggtcatttctcct
ttgaaaaacgcatgtgttcaccatctgcaggaggctgaggacagacaggagctgaccttg
agtcatcaggtacagagagtggtcagcatggccaccctggcagctctgtgtgaggccgtg
gaccagcacccagtgctgcagcctgactctcccaatgccgagcctgtggacaggttcctg
tcagctcttccactcaaccacgtgctgcagaagccccgatcagatgagcagagcgtcggc
atgtgtcccctggagaatggcagtgtctttgaagaatcgtcatcttccaaaggctggggg
aaagtagtcgcacagtatctacatgatcagtgggtctgcctctcctacctgctgagaaag
taccaccaccttattccagccacggaaagtgacagtgacgtgtcagagtgctttctccct
gctgtcgagatgcctgtgcagaccctgcaggcagccctggacgtcctcacggtcctccct
gccggctccatcttgcctgtgttccgctgcatggaggtgctggttcccaagcttctgacc
tctgaggagacgctctgcatagagtcctttgaggtggcttggaaaattatatcttccttg
agcaacacacagctgacgttctggcctaatttaaaggcttttgttcaccttgttttcgac
catgagattcttaccattgccgcaaaactcaagggccaggcgtacttcaaaataaaagag
attatgtgcaagatgattgaaatgtcctccataaaatcaggtgtcttcaatattctgata
cgtcactgctgccagtcttggctggcggctgcttccggcgtgtcccaggggtcattctcc
agtgctaaggattacagtaaacttgtcctggaggcttgcgtgtttggaacagtgtttagg
cgcgatcagagacttattcaggatgtccaaaccttcatagaaaaccttggacaaggctgt
gcagcaaacatcgtcattgagaacactaagagagaagattattatgtgagaatctgtgcc
atcaaattcttgtgtctgctagatggctccgatgtgtcccacaagttgttcttagaagct
cttgccgtcaagctcttggagaaggatgagtcggcctccaggtccagaactcgataccat
gagaactccctccagcaccgggtgaagaaccgtgtgtggcagactctgcttgtcctcttc
cctgcatttgaccagaacttcttacatgggattattgataaggtctttcacgctggcttc
accaacaatcaagcgtccataaaatattttattgagtggcttattatattgattcttcat
aaattccctgagttccttccaaagttctgggcgtgtttttcttatggtgaagaaaaaatt
aagacaagcatttgtacatttttatctgttttatcacatttggacatcatcgttcaaaat
attccagaaaagaagctggttctaaagcaggccctcaccgttgccctccagtggtgtctg
agtcacaacttcagtgttcggctctatgctctggtagccctcaagaaggcctggcatctg
tgtaaaacactgcggtttgaagagtgcggcgcctggaccacggtcatcgagtgcagcctc
agccaagcagagagcatgcacggagcagggaacgccaggaagaactggcagcgaatccag
gaccatttcttcttctccacctttcaccccctgaaggactactgtctggagaccatattt
tacacgctcccacggctctcgggtgtcactgaagaagagtggatcgccttggataaattt
gccaaattcacagacatcccttccaatgcagggtcccagtggtacctgtctgggactgca
cttggtgagctgagtccaggagactggtcccagcaggaccaaggttctactttgggtgaa
gcagacagtcagtcagagtgggctgatgtccagaaaaaaatcatcccatggggacaaagc
gctctggagtcagaactggagctcgagtttcaggatcgggctgccaagctcggaaagtcc
attagcagactgatcgttgtggcctcactcatcgacaagccaaccaacctgggagggctg
tgcaggacctgtgaggtgttcggggctgcagtactcgttgtcggcagccttcagtgtgtc
agcgatagacagttccagcacctcagtgtctctgcagagcagtggcttcctctggtggag
gtgagaccatcccagctgatggattatttgcagcagaaaaaggcggaaggctacactgtc
attggcgtggagcagacagcgcagagctcagatctggcccagtaccgcttccctgagaag
tcgctgctgctgttgggaaacgagcgggaaggaatcccagccaacctgatccagcagctg
gatgtgtgtgtggagattcctcagcagggcatcatccgctcactaaatgtgcatgtgagc
ggggctctgctgatctgggagtacactagacagcagctgctcaggtgtgcagagccacca
tcctga
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integrated database retrieval system
