Mus pahari (shrew mouse): 110337873
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Entry
110337873 CDS
T05929
Symbol
Hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03015
mRNA surveillance pathway
mpah05134
Legionellosis
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110337873 (Hbs1l)
09160 Human Diseases
09171 Infectious disease: bacterial
05134 Legionellosis
110337873 (Hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110337873 (Hbs1l)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110337873 (Hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
AAA_29
Motif
Other DBs
NCBI-GeneID:
110337873
NCBI-ProteinID:
XP_021076582
Ensembl:
MGP_PahariEiJ_G0023782
LinkDB
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Position
21:44822351..44892643
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AA seq
682 aa
AA seq
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MARHRNVRGYNYDEDFEDDDLYGQSVEDDYCISPSTAAQFIYSRRDNPEEEYGYEDLRES
SNSLLNHQLSEIDQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQDG
AQPLKERSERAVCAGQPSKGKSVISRSSQSESEIVPKVAKMTVSGKKQSMGFEVPGLTAE
ENGHNVRAPHRGPPGDDVSVASPNVPEIGTPKSGLPPPSLQTSEELGSTPTPGRKPGKLR
QQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKA
GKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQA
DVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEIT
GKLGHFLKQAGFKESDVAFIPTSGLSGENLTARSQSSDLTKWYKGMCLLEQIDSFKPPQR
SIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGDRLLAMPPNETCTAKGITLHDEPVD
WAAAGDHINLTVVGMDIIKINVGCIFCGLKEPIKACTRFRARILVFNIEVPITKGFPVLL
HYQTVSEPAVLKRLISVLNKSTGEVTKKKPKLLTKGQNALVELQTQRPVALELYKDFKEL
GRFMLRYGGSTVAAGVVTEIKE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcatcggaacgtccggggctataactacgacgaagattttgaagatgatgat
ctctatggccagtctgtggaggatgactattgcatctcaccttcaacagctgctcagttc
atttactcacgccgtgacaaccctgaagaagaatatggctacgaagatctgagagagtct
tctaattctcttttgaatcaccaattaagtgaaattgaccaagctcgcctgtattcatgc
ctcgatcacatgagagaggtactgggggacgctgtgcccgatgacatactgactgaggca
attctgaaacacaaatttgatgtgcagaaggctttgtccgtggttctggaacaagatggt
gcgcagcctttgaaggagaggagtgagagagcagtgtgtgcaggacagccttcaaaagga
aaatcagttatatctcggtcatcccagagtgaatctgaaattgtgccaaaagttgctaaa
atgactgtatccgggaagaagcagagcatgggatttgaagtgcctggcttaactgctgag
gaaaatggacacaatgtgcgtgctcctcacagagggcctcctggtgatgatgtgagcgtc
gcttctcctaacgttcctgagatcggcactccgaaatctggcctcccacctccctccctt
caaacatcagaagagctgggctccactccgaccccagggagaaagcctggcaagctgagg
cagcagatagacgtgaaagcggaattggaaaagcggcagggcgggaagcagctcctcaac
ttagtggtcattggtcatgttgatgctgggaaaagtactctgatgggccatatgctttat
cttctgggtaatgtaaacaaaagaactatgcataagtatgagcaagaatctaaaaaggct
ggcaaggcttcatttgcatatgcgtgggtcttggatgaaactggagaagaaagggaaagg
ggagtaacgatggatgtaggcatgacgaagtttgaaaccacgaccaaagttattacctta
atggatgctccagggcataaggatttcattccgaacatgatcacaggagcggcccaggct
gacgtagctgtcttggtcgttgatgccagcagaggagagttcgaagctggatttgagacg
ggaggacagacccgagagcatggccttttggtccgatctcttggagtgacacagcttgct
gtggctgtcaataaaatggatcaggtaaattggcaacaagaaagatttcaagagattact
ggaaaacttgggcactttctcaagcaagcaggttttaaggagagtgatgtagcttttatc
ccgacgagcggcctgagtggtgagaatttaaccgcaaggtcacagtccagtgacctcacg
aagtggtacaaagggatgtgcttattggagcagattgattccttcaagccccctcagcgc
tcgattgacaaaccttttagattatgtgtgtctgatgtcttcaaagatcaaggatctggc
ttttgtgtgactggtaaaattgaagctggttacatccagactggtgaccgactgttagcc
atgccacccaatgaaacctgtactgctaaaggaatcactctgcatgatgagcctgtcgac
tgggcagcagcaggcgatcacattaatctcactgtggttgggatggacatcattaagatc
aatgtcggctgcatattctgtggcctcaaagaacccattaaggcttgcacccgcttcaga
gctcggatcctcgtcttcaatattgaagttcctatcactaaagggtttcctgtgctgcta
cactaccaaaccgtcagtgagcctgctgttcttaagcgattgattagtgtcctaaacaaa
agtactggtgaagtcacaaagaagaagcccaagttgctgaccaagggccagaacgccttg
gtagagctgcagacacaaagaccggtggctcttgaactctacaaagacttcaaggagctg
gggcggtttatgctgcgttacggtggctccacggtagctgccggtgttgtcactgagata
aaagagtga
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