Mus pahari (shrew mouse): 110337900
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Entry
110337900 CDS
T05929
Symbol
Arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03082
ATP-dependent chromatin remodeling
mpah04714
Thermogenesis
mpah05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110337900 (Arid1b)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
110337900 (Arid1b)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
110337900 (Arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mpah03000
]
110337900 (Arid1b)
03021 Transcription machinery [BR:
mpah03021
]
110337900 (Arid1b)
03036 Chromosome and associated proteins [BR:
mpah03036
]
110337900 (Arid1b)
Transcription factors [BR:
mpah03000
]
Eukaryotic type
Helix-turn-helix
ARID
110337900 (Arid1b)
Transcription machinery [BR:
mpah03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110337900 (Arid1b)
Chromosome and associated proteins [BR:
mpah03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110337900 (Arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
110337900
NCBI-ProteinID:
XP_021076634
Ensembl:
MGP_PahariEiJ_G0023339
LinkDB
All DBs
Position
21:1825101..2173601
Genome browser
AA seq
2299 aa
AA seq
DB search
MAHSASAAAAAASSNSAQSGGSEAALKEGGSAAALSSSAAVAASSSSAGPGSAMETGLLP
NHKLKAVGEAPAAPPHQQHHHHHAHHHHHHHAHHLHHLHHHHALQQQLNQFQQPQPPQPQ
QPPPPPPPPQQHPTANNSLGGAGGGAPQPGPDMEQPQHGGAKDSVAGNQADPQGQPLLSK
PGDEDDAPPKMGEPAGSRYEHPGLGAQQQPAPVAVPGGGGGGPAAVSEFNNYYGSAAPAS
GGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAGAPSSMDPLQNSHEGYPNSQYNHYPGYS
RPGAGGGGGGGGGGGGGGGSGGGGGGGGAGGAGGAAAAAAGAEAVAAAAAAAAAAAAAGG
GGGGGYGGSSSGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGAAAAAGGFQRFAGQNQ
HPSGATPTLNQLLTSPSPMMRSYGGSYPDYSSSSAPPPPSQPQSQAAAGAAAGGQQAAAG
MGLGKDLGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMG
THPHSQPQQSSPYPGGSYGPPGAQRYPLGMQGRAPGALGGLQYPQQQMPPQYGQQAVSGY
CQQGQQPYYNQQPQPSHLPPQAQYLQPAAQSQQRYQPQQDMSQEGYGTRSQPPLAPGKSN
HEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQSPFSPH
ASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSHPALSQ
SPMPQERGFMTGTQRNPQMSQYGPQQTAPSMSPHPSPGGQMHPGISNFQQSNSSGTYGPQ
MSQYGPQGNYSRTPTYSGVPSASYSGPGPGMGINANNQMHGQGPAQPCGAMPLGRMPSAG
MQNRPFPGTMSSVTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGS
FPGMNQSGLVASSSPYSQPMNNNSSLMSTQAQPYSMAPTMVNSSTASMGLADMMSPSESK
LSVPLKADGKEEGVSQPESKSKDSYSSQGISQPPTPGNLPVPSPMSPSSASISSFHGDES
DSISSPGWPKTPSSPKSSSSSTTGEKITKVYELGNEPERKLWVDRYLTFMEERGSPVSSL
PAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLF
AFECKIERGEEPPPEVFSSGDAKKQPKLQPPSPANSGSLQGPQTPQSTGSNSMAEVPGDL
KPPTPASTPHGQMTPMQSGRSSTVSVHDPFSDVSDSAYPKRNSMTPNTPYQQGMGMPDMM
GRMPYEPNKDPFSGMRKVPGSSEPFMTQGQMPNSGMQDMYNQSPSGAMSNLGMGQRQQFP
YGTSYDRRHEAYGQQYPGQGPPTGQPPYGGHQPGLYPQQPNYKRHMDGMYGPPAKRHEGD
MYNMQYGGQQQEMYNQYGGSYSGPDRRPIQGQYPYPYSRERMQGPGQMQPHGIPPQMMGG
PMQSSSSEGPQQNMWATRNDMPYPYQNRQGPGGPAQAPPYPGMNRTDDMMVPDQRINHES
QWPSHVSQRQPYMSSSASMQPITRPPQSSYQTPPSLPNHISRAPSPASFQRSLESRMSPS
KSPFLPTMKMQKVIPTVPASQITGPPPQPPPIRREITFPPGSVEASQPVLKQRRKITSKD
IVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVEYFRKC
LIDIFGILMEYEVGDPSQKALGHHAGKKDDSQSLEDDSGKEEEDAEYLVEEKEEEEEEEE
DSEKIESEGKSGAAPAAPDATVDPKETPKQASKFDKLPIKIVKKNNLFVVDRSDKLGRVQ
EFNSGLLHWQLGGGDTTEHIQTHFESKMEIPPRGRPPPPPSSTGKKKELGGKGDSEEQPE
KSIIATIDDVLSARPGALPEDTDPGPQTDSGKFPFGIQQAKSHRNIRLLEDEPRSRDETP
LCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHPGLVLILGKLILLHHEHPERKR
APQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLPILD
GLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATPPFSRQEK
FYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAIAVQKGSIGNLISFLEDGVTMA
QYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEGRLLDISISAV
LNSLVASVICDVLFQIGQL
NT seq
6900 nt
NT seq
+upstream
nt +downstream
nt
atggcccatagcgcgagcgccgcggcggccgccgccagctccaacagcgcgcagagcggc
ggctccgaggcggctctcaaggagggtggaagcgccgccgcgctgtcctcctccgccgcc
gtcgcggcctcttcctcctcggcgggccccggctcggccatggagaccgggctgctcccc
aaccacaaactgaaagccgttggcgaggcccccgctgcaccgccccatcagcagcaccac
caccaccatgcccaccaccaccatcaccaccatgcccaccacctccaccacctccaccac
caccacgcactacagcagcagctaaaccagttccagcagccgcagccgccgcagccacag
cagccgccgccgccgccaccgccgccgcagcagcatcccactgccaacaacagcctgggc
ggtgcgggcggcggcgcgcctcagcccggcccggacatggagcagccgcaacatggaggc
gccaaggacagtgtcgcgggcaatcaggctgacccgcagggccagcctctgctgagcaag
ccgggcgacgaggacgacgcgccgcccaagatgggggagccggcgggcagtcgctatgag
cacccgggcctgggcgcgcagcagcagcccgcgccggtcgccgtgcccgggggcggcggc
ggcggtccggcggccgtctccgagtttaataattactacggcagcgctgcccctgctagc
ggcggccccggcggccgcgctgggccttgctttgatcaacatggcggacaacaaagcccc
gggatggggatgatgcactccgcctctgccgccgccggggcccccagcagcatggacccc
ctgcagaactcccacgaagggtaccccaacagccagtacaaccattatccgggttacagc
cggcccggcgcgggcggcggcggcggcggcggcggcggaggaggaggaggaggaggcagc
ggaggaggtggaggaggaggaggagcaggaggagcaggaggagcagcggcagcggcagca
ggagccgaagctgtggcggcggcggcggccgcggcggcggcggcagcagcagcaggagga
ggaggcggcggcggctatgggggctcgtcctcggggtacggggtgctgagctccccgcgg
cagcagggcggcggcatgatgatgggccccgggggcggcggggccgcgagcctcagcaag
gcggccgccggcgcggcggcggcggcggggggcttccagcgcttcgccggccagaaccag
cacccgtcgggggccacaccgaccctcaaccagctgctcacctcgcccagccccatgatg
cggagctacggcggtagctaccccgactacagcagctccagcgcgccgccgccgccgtcg
cagccccagtcccaggcggcggcgggggcggcggcgggtggccagcaggcggccgcgggc
atgggcttgggcaaggacctaggcgcccagtacgccgctgccagcccggcctgggcggcc
gcgcaacaaaggagtcacccggcgatgagccccggcacccccggaccgaccatgggcaga
tcccagggcagccccatggaccccatggtgatgaagagacctcagttgtatgggatgggt
actcacccccactcccagccgcagcagagcagcccatacccaggaggctcctacggtccc
ccaggtgcacagcggtatccccttggcatgcagggccgggcgccaggagccctgggaggc
ttgcagtacccgcagcagcagatgccaccgcagtacggacagcaagctgtgagtggctac
tgccagcaaggccagcagccatactacaaccagcagccgcagccctcgcacctcccgccc
caggcacagtacctgcagccggcggcacagtcccagcagaggtaccagccacagcaggac
atgtctcaggaaggctatggaactagatctcagcctcctctggcccctggaaaatccaac
catgaagacttgaatttaatccaacaggaaagaccatccagtctaccagacctgtctggc
tccatcgatgacctccccacgggaacagaagcaactctgagctcagcagtcagtgcatcc
gggtctacaagcagccagggggatcagagcaacccagctcagtctcctttctccccacat
gcatcaccccacctctccagcatccctggggggccgtcaccttctcctgttggctctcct
gtgggaagcaaccaatcgaggtccggtccgatctcccctgcgagtattccaggcagccag
atgcctccacaaccacctggaagccagtcagaatccagttcccatcctgccttgagccag
tcaccaatgccacaggaaagaggttttatgacaggcacacagagaaaccctcagatgtct
cagtacggacctcagcagacagcaccatccatgtcgcctcacccatctcctgggggccag
atgcatcctgggatcagtaactttcagcagagtaactcaagtggcacgtacggcccacag
atgagccagtatggaccccaaggcaactactccagaaccccaacatatagcggggtaccc
agtgcaagctacagtggcccagggcccggtatgggcatcaatgccaacaaccagatgcat
ggacaagggccagcccagccatgtggtgctatgcccctgggacgaatgccttcagctggg
atgcagaacagaccatttcctggaaccatgagcagcgtcacccccagttctcctggcatg
tctcaacagggagggccaggaatgggcccaccaatgcccactgtgaaccggaaggcccag
gaagctgccgcggccgtgatgcaggctgctgcaaactcagcacaaagcaggcaaggcagt
tttcctggcatgaaccagagtggcctcgtggcctccagctctccctacagccagcccatg
aacaacaactcgagcctgatgagcacccaggcccagccctacagcatggcgcccacaatg
gtgaacagctccacagcatctatgggtcttgccgatatgatgtctcctagtgagtccaaa
ttgtctgtgcctcttaaagcagatggtaaagaagaaggcgtgtcccagcctgagagcaag
tcaaaggacagctacagctctcagggcatttcccagcctccaaccccaggcaacctgcct
gtcccttccccaatgtctcctagctctgccagcatctcctcctttcacggagatgagagt
gacagcattagcagcccaggctggcccaagactccgtcaagccctaagtccagctcttcc
tccaccactggggagaagatcacgaaggtctatgagctggggaatgagccggagaggaag
ctgtgggtcgaccgttacctgacgttcatggaagagaggggctccccggtgtccagtctg
ccggcagtgggcaagaagcccctggacctgttccgactctatgtctgcgtcaaggagatt
ggaggcttggcgcaggttaataaaaacaagaagtggcgtgagctggcaaccaacctgaac
gttggcacttcaagcagcgcggccagctccctgaaaaagcagtatattcagtacctgttc
gcctttgagtgcaaaattgagcgtggggaagagcccccacctgaagtcttcagctccggg
gatgcgaagaagcagccaaagctccagccgccatctcctgctaactcaggatccttacaa
ggcccgcagactccacagtcaactgggagcaattcaatggcagaggttccaggtgacctg
aagccaccaaccccagcctctacccctcatggacagatgactcccatgcaaagtggaaga
agcagtacagtcagtgtgcatgacccgttctcagacgtgagtgactcagcgtacccaaaa
cggaactccatgactccaaacaccccgtaccagcagggcatgggcatgccagacatgatg
ggcaggatgccctatgaacccaacaaggaccctttcagtggaatgagaaaagtgcctgga
agtagcgagccctttatgacacaagggcagatgcccaacagtggcatgcaggacatgtac
aaccagagcccctcaggtgccatgtccaatctgggcatggggcagcggcagcagtttcca
tacggaaccagttatgaccgaaggcatgaggcttacgggcagcagtacccaggccaaggc
cctcccacaggacagccgccgtatggaggacaccagcctggcctgtacccacagcagccg
aattacaaacgccatatggatggcatgtacgggcctccagccaagcggcacgagggagac
atgtacaacatgcagtatggcggccagcagcaggagatgtataaccagtatggaggctcc
tactctggcccggacagaaggcccatccagggacaatatccctacccctacagcagagaa
aggatgcagggcccgggccagatgcagccacacggaatcccacctcagatgatggggggc
cccatgcagtcatcctccagcgaggggcctcagcagaacatgtgggctacacgcaacgat
atgccttatccctaccagaacaggcaaggcccaggaggccctgcacaggcacccccttac
ccaggcatgaaccgcacagatgatatgatggtacctgatcagaggatcaatcacgagagc
cagtggccttctcacgtcagccagcgccagccttacatgtcatcttcggcctccatgcag
cccatcacgcgcccacctcagtcatcctaccagacgcccccgtcactgccaaaccacatc
tccagggcacccagccccgcctccttccagcgctccctggagagtcgcatgtctccaagc
aagtctcccttcctgcccaccatgaagatgcagaaggtcatacccacagtccccgcatcc
cagatcaccggaccacccccacagccaccgccaatcagaagagagattacctttcctcct
ggctcagtagaagcatcacagccagtcctgaaacaaaggcgaaagattacctcaaaagat
attgttactcccgaggcgtggcgtgtgatgatgtcccttaaatctggtttgctggctgag
agcacgtgggctctggacaccatcaacattctcctctatgatgacagcaccgttgccacc
ttcaatctttcccagctgtctggattcctggaactattagtagaatactttcgaaaatgc
ctaattgacattttcggaattcttatggaatatgaagtgggtgaccccagccaaaaggcg
cttggccaccatgcagggaagaaagatgacagccagtccctggaagatgattctgggaaa
gaagaagaggatgctgagtatcttgtggaagagaaggaggaggaagaggaggaagaggaa
gacagtgaaaagatagagtcagaggggaagagcggagctgccccagctgctccagatgcc
accgtggaccccaaggagacgccaaagcaggccagtaagtttgacaagctgcccataaag
attgtcaaaaagaacaacctgtttgtggtggaccggtccgacaagctggggcgagtgcag
gagttcaacagcgggctcctccactggcagctgggtggtggtgacactaccgagcacatc
cagactcacttcgagagcaagatggagatccctcctcgcgggcgtccacctccacctcca
agctccacgggtaagaagaaagagctgggaggcaaaggtgattctgaagagcagccggag
aaaagcatcatagccaccatcgatgatgtcttgtctgcccggccaggggctctgcctgaa
gacaccgacccaggaccccagaccgacagcggcaagtttccctttggaatccagcaggcc
aaaagccaccggaacatcaggctcctggaagacgagcccaggagccgagatgagacgccg
ctgtgcaccatcgcgcactggcaggactcactggccaagcgctgcatctgtgtgtcaaac
atcgtgcggagcttgtctttcgtgcctggcaacgatgcagagatgtccaaacacccgggc
ttggtgctgatcctaggaaagctgattctgctgcatcacgagcatccggagagaaagcgg
gcaccacagacctatgagaaggaggaggacgaggacaagggggtggcctgcagcaaagat
gagtggtggtgggactgcctcgaggtcttgcgggataacaccctggtcacgttggcgaac
atttccgggcagctagacttgtctgcttacacagagagcatctgcttgccgatcctggac
ggcttgctgcactggatggtgtgcccatccgcagaggctcaggacccctttcccactgtg
gggcccaactcagtcctgtcgccgcagagacttgtgctggagaccctgtgtaaactcagt
atccaggacaacaacgtggacctgatcttggccacgcctccatttagtcgtcaggagaaa
ttttatgctacattagttaggtacgttggggatcgcaaaaatccagtctgtcgagaaatg
tccatggcgcttttatcgaaccttgcccagggggacacactggcggcgagggcaatagct
gtgcagaaaggaagcattggaaacttgataagcttcctagaggacggggtgacgatggcg
cagtaccagcagagccagcataaccttatgcacatgcagcccccacctctggaaccccct
agtgtagacatgatgtgccgggccgccaaagctttgctggccatggccagagtggacgag
aaccgctcagagttccttttgcacgagggtcggttgctggatatctcgatatcagctgtc
ctgaactctctggttgcatctgtcatctgtgatgtactgtttcagattgggcagttatga
DBGET
integrated database retrieval system
