Mycolicibacillus parakoreensis: MIU77_03505
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Entry
MIU77_03505 CDS
T07959
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mpak
Mycolicibacillus parakoreensis
Pathway
mpak03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mpak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MIU77_03505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpak03400
]
MIU77_03505
Enzymes [BR:
mpak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MIU77_03505
DNA repair and recombination proteins [BR:
mpak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MIU77_03505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ULN53424
LinkDB
All DBs
Position
711489..713744
Genome browser
AA seq
751 aa
AA seq
DB search
MNRPPVTLTNAEKVLYPATGTTKADVFAYYTEIAPVLVPHTAGRPATRKRWPDGVSGSSF
FEKHLADSAPDWLHRGTVAHRSGTTTYPIIDGVDALAWIAQQAALEIHVPQWRFVDARPG
PATRLVLDLDPGDGVSLAQTARVARAIRALLADIDLAAYPVSSGSKGLHVYSPLDRPVSS
SGASTLARHIAEQLQRDLPELVTVTMAKAARAGKVFVDWSQNNAAKTTIAPYSLRGREHP
TVAAPRSWAELDDTGLAQLRYDEVCRRVARDGDLLAGLDPAASRGGAPADRLAAYRRKRN
AAKTSEPIPAATGGSGEDSVFVVQEHHARRLHYDLRLERNGVLMSWAVPKNLPHDPGVNH
LAVRTEDHPLEYAEFEGTIPAGQYGAGTVTLFDSGRYDTEKFDDDEIIVVLHGARLTGRY
ALIRTDGDQWLAHRMKDQRQVAFTDLEPMLATAGQVDGLGADRWAFDGKWDGYRMLVYAD
ADTLRLRSRSGRDVTAEYPGLHGLADELDGHRVILDGEVVAPDRHGVPSFAGLQNRAAGR
DVAFWAFDLLHLDGRSLLRVRYRDRRRLLETLAAGTGLTVPALLPGDGAEALAAARERGW
EGVVAKRWSGAYHPGRRSRSWIKDKLWRTQEIVIGGWRRGERPEGIGSLLMGVPEDGGVG
AGGLVFVGKVGTGFTERALEQLAQALAPLRTDRSPFTERLRARDRRGVTFVRPELVGEVR
FGERTADGRLRHPSWRGLRPDKSPDQVVTEW
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgtccgccggtcaccctgaccaacgccgagaaggtgttgtatccggcgaccggg
accaccaaggccgacgtcttcgcctactacaccgagatcgccccggtgctggtgccgcac
accgccggtcggcccgccacccgcaaacgctggcccgacggggtctcgggttcctcgttc
ttcgaaaaacacctggccgactccgcccccgactggctgcaccgcggtactgtcgcccac
cggtcgggcaccaccacctacccgatcatcgacggcgtggacgccctggcctggatcgcc
caacaggcggcgttggagatccatgtcccgcagtggcgtttcgtcgatgcgcgccccggc
ccggcgacccggctggtgctcgacctcgaccccggtgacggggtgtcgttggcgcagacc
gcgcgggtggcgcgggccatccgcgcgttgctggccgacatcgatctggccgcgtacccg
gtgagcagcgggagcaagggattgcacgtctacagcccgctggatcggccggtcagctcc
tcgggggcctcgacgctggcccgccacatcgccgagcagctgcagcgcgacctgcccgaa
ctggtcaccgtgaccatggcgaaagccgcacgggccggcaaggtgttcgtcgactggagc
cagaacaacgccgccaagaccaccatcgccccgtactcgctgcgcggccgcgagcacccc
accgtcgccgcgccgcgcagctgggccgaactcgacgacaccggcctggcccaactgcgc
tacgacgaggtgtgccgccgggtcgcccgcgacggcgacctgttggccgggctggatccc
gcagcgtcccgcggtggtgcgcccgccgaccggctggccgcctaccggcgcaaacgcaac
gccgccaagacatccgaaccgattccggcggccaccgggggctccggcgaggacagtgtc
ttcgtcgtccaggagcatcacgcccgccgactgcactacgatctgcgcctcgagcgcaac
ggggtgctgatgagctgggcggttccgaagaacctgccccacgatcccggggtcaaccac
ctggcggtgcgcaccgaggatcatccgctggaatacgccgagttcgagggcacgatcccc
gcggggcagtacggagccggcaccgtcaccctcttcgactccgggcgttacgacaccgag
aagttcgacgacgacgagatcatcgtggtcctgcacggggcccggctcaccgggcgctac
gcattgatccgcaccgacggtgaccagtggttggcacaccggatgaaagatcaacgccag
gtggcgttcaccgacctcgagccgatgttggccaccgcggggcaggtcgacgggctgggc
gcggaccgctgggccttcgacggcaagtgggacggctaccggatgctggtctacgccgac
gccgacacactgcggctgcgctcgcgcagcggtcgtgacgtcaccgccgagtatcccggg
ctgcacggcctggccgacgagctggacggccaccgcgtcatcctcgacggtgaggtggtg
gcccccgaccggcacggggtgcccagcttcgccgggttgcagaaccgcgccgccggccgg
gacgtggcgttctgggcgttcgacctgctgcacctcgacgggcgttcgctgctgcgggtc
cgctaccgggaccggcgccggctgttggagaccctggccgcgggcaccgggttgacggtg
ccggcgctgctgcccggcgacggcgccgaggcgctcgcggcggcccgcgaacgcggctgg
gagggggtggtggccaaacggtggtcgggcgcctaccaccccgggcgccgctcgcggtcg
tggatcaaagacaagctgtggcgcacccaggagatcgtgatcggcgggtggcgccgcggt
gagcgccccgagggcatcggctcgctgctgatgggtgtgcccgaggacggcggcgtgggc
gccggggggctggtcttcgtcggcaaggtcggcaccggcttcaccgagcgggccctggag
cagttggcgcaggcgctcgcgccgctgcgcaccgatcgctcaccgttcaccgaacgactc
cgtgcccgcgaccgccgcggggtgacgttcgtgcgcccggagttggtcggcgaggtgcgc
ttcggggagcgcaccgccgacgggcggctgcggcatccgagctggcggggcctgcggccc
gacaagagtcccgaccaggtggtgaccgagtggtga
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