Mycolicibacillus parakoreensis: MIU77_05900
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Entry
MIU77_05900 CDS
T07959
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mpak
Mycolicibacillus parakoreensis
Pathway
mpak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MIU77_05900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpak03019
]
MIU77_05900
03009 Ribosome biogenesis [BR:
mpak03009
]
MIU77_05900
Enzymes [BR:
mpak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MIU77_05900
Messenger RNA biogenesis [BR:
mpak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MIU77_05900
Ribosome biogenesis [BR:
mpak03009
]
Prokaryotic type
rRNA processing factors
MIU77_05900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
ULN53827
LinkDB
All DBs
Position
1246389..1249274
Genome browser
AA seq
961 aa
AA seq
DB search
MTDDVQSTDPSENPQPGELPEKLRVHSLARVLGTTSRRVLEALAELDGRMRSAHSSVDRG
DAVRVRDLLEAAAAPTAATESGGAPGVVAGDAVEPESRLMLETHETPQTGVTDQPEYMPL
FVAPQPVTPSRGGDDADGETTESDDAGDPGGGDDPEGDTDSDRPSGRRRRRGRRGRGRGR
GEQNGADDADGDDSGEGSDDTDGDDNGQGDGEGSDDNGGSESSSRRRRRRRRRKNGSGDG
AEDTASDDPPNTVVHERAPRGASKDSEIQGINGSTRLEAKRQRRRDGRDAGRRRPPVLSE
AEFLARREAVQRTMVVRDKVRTEPPHEGSRYTQIAVLEDGIVVEHFVTSAASASLVGNIY
LGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGANRKIEQALKPGDYVVVQVS
KDPVGHKGARLTTQVSLAGRYLVYVPGASSTGISRKLPDTERQRLKQILREVVPPEAGVI
IRTASEGIKEDDIRADVARLQERWNQIDATAAQTKKKAAGAAVSLYEEPDVLVKVIRDLF
NEDFSELIVSGDDAWTTITDYINAVAPELIDKVTRYAPPSGPDGQPGPDVFAVHRIDEQL
TKAMDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGAGGNLEETVTKNNLEAAEEIVRQL
RLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGT
GLIEAFSTSCSHCAGRGITLHADPVDSTSSGGRGSGSGGRRNRRSRKGRSDEPVVAKVPA
HTAGEHPMFKAMAAANQADEADEDGATGEDGAGARGEAAVTAQAEREADAAVSDIDEATA
GARGGAAGARRTPQTAFTDEADEVDEVDDVDEADEADDDEDDYDDEADEADEADDGDEDE
FDEDYSSDFDELDDTDDDYDDRDDRDDRDDPDDQDEDEFAPTRPRRRRAAARPAGPPAHD
G
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatgatgttcaatccacagatccgtccgaaaacccgcaaccgggagagctcccc
gagaagctgagggtgcactccctggcgcgggtgctggggaccaccagccgccgcgtgctc
gaggcgctcgccgagctcgacgggcgcatgcgtagtgcccactccagcgtcgaccgcggc
gacgcggtgcgagtgcgcgacctgctggaggcggccgctgcgccgacggccgcaaccgag
tccggcggggcgcccggggtggtcgccggcgacgccgtcgaaccggagtcgcggctgatg
ctcgagacccacgagacgccgcagaccggggtgaccgaccagcccgaatacatgccgctg
ttcgtggcgccgcagccggtcacaccgtcccgcggtggcgacgacgccgacggcgagacc
acagagagcgacgacgccggcgaccccggcggcggggacgaccccgagggcgacaccgac
agcgaccgcccctcgggccggcggcggcgccgcggccggcgcgggcgcggccgcgggcgc
ggcgagcagaacggcgccgacgacgccgacggcgacgacagcggtgagggcagcgacgac
accgacggcgacgacaacggccagggcgacggtgagggctccgacgacaacggcggttcg
gagagcagcagtcggcggcgccggcggcgccgccgccgcaagaacggctccggggacggc
gccgaggacacggcgtccgacgacccgccgaacaccgtcgtgcacgagcgcgccccccgc
ggcgcctccaaggactccgagatccagggcatcaacggctccacccgattggaggccaaa
cggcagcgtcgtcgcgacggccgagacgccgggcgccgtcggcccccggtgctctccgag
gccgagttcctcgcccgccgcgaagcggtgcaacgcaccatggtggtccgcgacaaggtg
cgcaccgaaccgccgcacgagggctcgcggtacacccagatcgccgtgctcgaggacggc
atcgtcgtcgaacacttcgtcacctcggcggcgtcggcctcgctggtgggcaacatctac
ttagggatcgtgcagaacgtgttgccgtcgatggaggccgcgttcgtcgacatcggccgc
ggccgcaacggcgtgctctacgccggcgaggtgaattgggaggccgccggcctcggcggg
gcgaaccgcaagatcgagcaggccctcaaacccggcgactacgtcgtcgtgcaggtcagc
aaggatccggtgggacacaagggggcgcggctgaccacccaggtgtcgctggccggccgc
tacctggtgtacgtgccgggagcgtcctcgaccgggatcagccgcaaactgcccgacacc
gagcgtcagcgtctcaagcagatcctgcgtgaggtggtcccaccggaggcgggggtgatc
atccgcaccgcgtcggagggcatcaaggaagacgacatccgcgccgacgtggcccgcctg
caggagcggtggaaccagatcgacgccaccgccgcgcagaccaagaagaaggccgccggc
gccgcggtcagcctgtatgaagaacccgacgtgctggtcaaggtcatccgtgatctgttc
aacgaggacttctccgagctgatcgtctccggcgacgacgcctggaccacgatcaccgac
tacatcaacgccgtcgctcccgaactgatcgacaaggtcacccggtatgcgccgccgtcc
ggcccggacggccagcccggcccggacgtgttcgcggtgcaccgcatcgacgaacagctc
accaaggcgatggaccgcaaggtgtggctgccgtcggggggcaccctggtgatcgaccgc
accgaggcgatgacggtggtcgacgtcaacaccggcaagttcaccggtgccggcggcaac
ctcgaggagaccgtcaccaaaaacaacctcgaggcggccgaggagatcgtgcgccagctg
cggctgcgcgacatcggcggcatcgtggtcatcgacttcatcgacatggtgctggagtcc
aaccgggatctggtgctgcggcggctcaccgaggcgctggcccgtgaccgcacccgccac
caggtctccgaggtgacctcgctgggcctggtgcagctgacccgcaagcggctcggcacc
gggctcatcgaggcgttctccacctcctgctcgcactgcgccgggcggggcatcaccttg
cacgccgaccccgtggactccacctcgtcgggggggcgcggatcgggctccggcgggcgg
cgcaaccggcggtcgcgcaagggccgttccgacgagcccgtggtggccaaggtcccggcc
cacaccgccggggagcacccgatgttcaaggcgatggccgccgccaaccaggccgacgag
gccgacgaggacggtgcgaccggcgaggacggcgcgggggcccggggcgaggcggcggtg
accgcgcaggccgaacgcgaggccgacgccgcggtcagcgacatcgacgaggccaccgcc
ggggcgcggggcggcgccgccggggcgcgacgcacaccgcagaccgcgttcaccgacgag
gccgacgaggtcgacgaggtcgatgacgtcgacgaggccgacgaggccgacgacgatgag
gacgactacgacgacgaggctgatgaggctgatgaggctgacgatggcgacgaggacgag
ttcgacgaggactattccagcgacttcgacgaactcgacgacaccgacgacgactacgac
gaccgggacgaccgggacgaccgggacgacccagacgatcaggacgaggacgagttcgcc
ccgacgcggccccggcggcgtcgtgccgcggcccgcccggccggcccgcccgcgcacgac
ggctga
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