Microbacterium paludicola: BO218_01145
Help
Entry
BO218_01145 CDS
T04601
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mpal
Microbacterium paludicola
Pathway
mpal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BO218_01145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpal03019
]
BO218_01145
03009 Ribosome biogenesis [BR:
mpal03009
]
BO218_01145
Enzymes [BR:
mpal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BO218_01145
Messenger RNA biogenesis [BR:
mpal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BO218_01145
Ribosome biogenesis [BR:
mpal03009
]
Prokaryotic type
rRNA helicases
BO218_01145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
APF32975
LinkDB
All DBs
Position
226835..228643
Genome browser
AA seq
602 aa
AA seq
DB search
MSTSAEQPVPESADEPPVITFRDLGLGEQVLKALSDVGYETPSAIQAATIPTLLEGRDVV
GLAQTGTGKTAAFALPILDRLDLTQKTPQALVLAPTRELALQVCEAFEKYASRTRGVHVL
PVYGGQGYGVQLSALRRGVHVIVGTPGRIMDHLDKGTLDLSELKYLVLDEADEMLKMGFA
EDVETILADTPDTKQVALFSATMPAAIRRMSKQYLNDPEEITVASKTTTSSTITQRYLIV
SYQQKIDALTRILEVENFEAMIVFARTKSATEEVAEKLRARGYSAAAINGDVAQVQRERT
VNQLKSGKLDILVATDVAARGLDVERISHVVNFDISTDTESYVHRIGRTGRAGRTGDAIS
FVTPRERGLVNAIERATRQPLTQMQLPSVDEVNVTRLSRFDDRITAALEDTDRIERFRDI
VAHYVRHHDVPEVDVAAALAVVAQGETPLLLEPDPEPRARAPREDRAPRSFDRDDRDGRP
ERRPRASNPNMTTYRIAVGKRHRVEPRQIVGALANEGGLSRGDFGAIQIRPDFSLVELPN
DMPQSTLDRLADTRISGKAIEIRVDTGGPSRSSRSRYDRDDRPRERDDRPARKPRHRSEP
SD
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
gtgtccacttctgctgaacagcctgtacccgagtccgccgacgagccgcccgtcatcact
ttccgcgacctcgggctgggggagcaggtgctcaaggcactctccgacgtgggctacgag
accccgtcggcgatccaggcggcgacgatcccgacgctcctcgagggacgcgacgtcgtc
gggctcgcgcagaccggtaccggcaagaccgccgccttcgcgctgccgatcctcgaccgg
ctcgacctgacgcagaagacccctcaggctctcgtgctggccccgacgcgagagctcgcg
ctgcaggtctgcgaagcgttcgagaagtacgcgtcccgcacccgcggcgtccacgtgctg
ccggtctacggcggccagggatacggtgtgcagctctcggcgctgcgccgcggtgtccac
gtgatcgtcggtacgcccggccgcatcatggaccacctcgacaagggcacgctcgacctg
tccgagctgaagtatctcgtgctcgacgaagccgatgagatgctgaagatgggcttcgcc
gaggacgtcgagacgatcctcgccgacacccccgacacgaagcaggtcgcgctgttctcg
gcgacgatgcccgcggccatccgccggatgtcgaagcagtacctcaacgaccccgaagag
atcaccgtcgcgtcgaagacgacgacctcctcgacgatcacccagcgctacctgatcgtg
tcgtaccagcagaagatcgacgccctcacccgcatcctcgaggtcgagaacttcgaggcg
atgatcgtcttcgcccgcacgaagagcgcgaccgaggaagtcgccgagaagctgcgcgcc
cgcggttactccgccgccgccatcaacggtgacgtcgcccaggtgcagcgcgagcgcacc
gtcaaccagctgaagtcgggcaagctcgacatcctggtcgccacggatgtcgctgcccgc
ggcctcgacgtcgaacgcatctcgcacgtggtgaacttcgacatctcgaccgacaccgag
tcgtacgtccaccgcatcggccgcaccgggcgtgccggccgcaccggcgacgcgatcagc
ttcgtcaccccgcgcgagcgcgggctcgtgaacgcgatcgagcgtgcgacgcgccagccg
ctgacgcagatgcagctgccgagcgtcgacgaggtcaacgtcacgcgcctgtcgcgcttc
gacgaccgcatcacggcggccctggaagacaccgaccgcatcgagcgattccgagacatc
gtcgcccactacgtccgtcaccacgacgtgcccgaagtggatgtcgccgccgcgctcgcc
gtcgtcgctcagggcgagaccccgctgctgctcgaacccgaccccgagcctcgcgcccgc
gctccgcgcgaggaccgcgccccccgatcgttcgatcgcgacgaccgcgatgggcgtccc
gagcgtcgcccgcgcgcaagcaacccgaacatgacgacctaccgcatcgcggtgggcaag
cgtcaccgcgtcgagccccgtcagatcgtcggcgcgctcgcgaacgagggcggtctgagc
cgcggcgacttcggcgccatccagatccgtcccgatttctcgctcgtcgagctgccgaac
gacatgccccagtcgacgctcgaccgcctggccgacacccgcatctcgggcaaggcgatc
gagatccgcgtcgacacgggcggaccgagccgcagctcgcggagtcgatacgaccgcgac
gatcgcccgcgcgagcgcgacgaccgcccggcgcgcaagccgcgccaccgctcggagccc
agcgactga
DBGET
integrated database retrieval system
