Microbacterium paludicola: BO218_01385
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Entry
BO218_01385 CDS
T04601
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mpal
Microbacterium paludicola
Brite
KEGG Orthology (KO) [BR:
mpal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mpal03016
]
BO218_01385
Enzymes [BR:
mpal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BO218_01385
Transfer RNA biogenesis [BR:
mpal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BO218_01385
Prokaryotic type
tRNA splicing ligases
BO218_01385
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
APF33018
LinkDB
All DBs
Position
275702..276871
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AA seq
389 aa
AA seq
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MEKLSNRLLSWASIIDEKTLDQARTASGMPFIHPHLALMPDAHLGKGATVGSVIPTLGAI
MPAAVGVDIGCGMIAVRTQFTKSQLLGRDLGTLREQIERAIPLSAGRDNRKVVATAEPRI
AELEELAEKHEFDPARYAGHWRNQLGSLGSGNHFIEVSVDETDAVWMFLHSGSRGVGNRI
ATHHIGVAQRLAKQWWIDLPDPDLAYLVEGTEEFRRYIRELRWAQHFALLNREEMMDRVA
RQLSETMGADVDELERINCHHNFTESEKHFGKQVWVSRKGAIQADAGRPGLIPGSMGTAS
YVVSGLGNPLSLNSSPHGAGREYSRSAARRTFTHDQLREAMVGIEFRDTDAFIDEIPQAY
KPIDRVMADAADLVEVRHTLRQLVNVKGD
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggagaagctctcgaacaggctgctgtcatgggcgagcatcatcgacgagaagaccctc
gatcaggctcgcaccgcgtctggcatgccgttcatccacccgcatctggcgctcatgccc
gatgcgcacctcggcaagggggcgaccgtcgggtcggtcatcccgacgctcggggcgatc
atgccggctgccgtcggcgtcgacatcgggtgcggcatgatcgccgtccgcacgcagttc
acgaagtcgcagctgctcggccgcgacctgggtacgctgcgcgagcagatcgagcgggcg
attccgctgtcggccggtcgcgacaaccgcaaggtcgtcgcgaccgccgagccgcgcatc
gccgagctggaggagctcgccgagaagcacgagttcgaccccgcgcgctacgccgggcac
tggcgcaaccagctcgggtcgctcggctcgggcaaccacttcatcgaggtgtcggtcgac
gagaccgacgcggtgtggatgttcctgcattccggctcgcggggagtgggcaacagaatc
gcgacgcaccacatcggcgtcgctcagcggctcgcgaagcagtggtggatcgacctgccc
gatcccgacctggcgtacctcgtcgagggcacggaggagttccggcgctacatccgcgag
ctccggtgggcgcagcacttcgcgctcctgaaccgcgaggagatgatggaccgcgtcgcc
cgtcagctgtccgagacgatgggcgccgacgtcgacgagctcgagcgcatcaactgccac
cacaacttcaccgagagcgagaagcacttcggcaagcaggtgtgggtgtcgcgcaagggc
gcgattcaggcggatgccggccggcccggcctcatcccgggatccatgggcacggcgtcg
tacgtcgtctcggggctcggcaacccgctgtcactgaactcgtcgccgcacggggcaggg
cgggagtactcgcggtcggccgcgcgccgaaccttcacgcacgaccagctgcgtgaggcc
atggtgggcatcgagttccgcgacacggatgccttcatcgacgagatcccgcaggcctac
aagccgatcgatcgcgtcatggcggatgccgccgacctcgtcgaggtgcggcacacgctg
cgtcagctggtcaacgtgaaaggcgattga
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