Microbacterium paludicola: BO218_01555
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Entry
BO218_01555 CDS
T04601
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mpal
Microbacterium paludicola
Brite
KEGG Orthology (KO) [BR:
mpal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpal03019
]
BO218_01555
Enzymes [BR:
mpal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BO218_01555
Messenger RNA biogenesis [BR:
mpal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BO218_01555
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
AAA_19
AAA_22
T2SSE
nSTAND_NTPase5
nSTAND3
AAA_30
SLFN-g3_helicase
ResIII
NACHT
UvrD-helicase
SRP54
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
APF33044
LinkDB
All DBs
Position
complement(311366..315337)
Genome browser
AA seq
1323 aa
AA seq
DB search
MSTPAPVISFPPELPVSAARDEIARAIRDHQVVIVAGATGSGKTTQLPKICLELGRTSIA
HTQPRRIAARTVAERIAAEMEVPLGGAVGYKVRFTDQVSAETQVALVTDGILLNEIHRDR
MLRRYDTIIIDEAHERSLNIDFLLGYLRRILPRRPDLKVIVTSATIDPESFAAHFADAQG
APAPIVEVSGRTYPVEVRYRPHDDSGDDETATDDVDGLVAALRELDREADGDVLVFLPGE
AEIRDAMDAVRSAYAKDARPTEVLPLYGRLSAAEQHRVFEPSRVAGVRRRVILATNVAET
SLTVPGIRYVVDAGTARISRYSNRSKIQRLPIEAVSQASAQQRAGRAGRTSAGIAIRLYA
EDDFTSRPEFTEPEILRTSLASVVLQMLALGFGDIADFPFLTPPDSRGVKAAFDLLVELR
AVRRDEKGAWRLTDTGREISRLPIDPRFARMLVEARALGVTRDVLAIVAGMSIQDVRERP
EERREEADRLHARFTDPTSDFLTLLNLWNHLQDQQRELGSSAFRRTCRAEHLNYVRVREW
FDVHRQLSTLARGDRDRGKRGRDEPSSDGTGAAHPDRVHRAILAGLLSQIGVLDTRSTAT
ARAATGRSGGGKPTRPRAEYRGARGAKFAIFPGSGLRKASPDAVMAAELVETSRLYARTV
AAIDPAWAEELAGDLAHRSMSDPHWSKDAGAAVAAEKVTLFGVEIVPRRRVQLAGRDREL
ARELFLRHALVEGDWNSAHLDKRLTAFERRNLELRRRLEKIEERERRRDILVGDEAVFAF
YDARIPRDVFDVRSFEAWWRDAAARTPRLLDMTEGDLAGDAAGSDERAFPARWRQGDQVL
SLAYRFEPGAPDDGVSVVVPLALLASLRPDGFDWQVPGLRDELIAGLLRALPKAIRRHVV
PAADWASRFAEELAGDGPESHDGLPARTLRDALAARIQRVANQPVTAADFDLERVPAHLS
MSFRAVDERGRPLGSSRDLAELQQRLANRSRASVARSLAKAAPRPGAQPAAASPAAGSPA
GATAAGPAGDQRSGIAEQTGLTDWTFGDLPELVDTRVAGGVVRGYPALVDEGASVALRIE
ATPERARRLTRAGVRRLVLLSVPSPATYVLDHLTAPEKLALAASPYPSAKALIEDARVAV
ADAVIDRTAASVRTPAQFQAVRDAFSAAVVDELFQTVSLSARILTLQRDVERAIRKENSM
VLLAALGDVKQQLAGLVFPGFLSRTGTARLAHLPRYLQGALDRVSTLSDNPGRDRQRLTE
FERAAALFAEAGGTIPPADDAPANLRHARWLLEEYRVSLFAQRLGTAEPVSIQRITKTLA
GTG
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
gtgtccacgcccgcccctgtgatctccttcccgcccgagctgcccgtcagcgcggcacgg
gacgagatcgcgcgcgccatccgcgatcaccaggtcgtgatcgtcgcgggtgccaccggc
tcgggcaagacgacgcagctgccgaagatctgcctcgagctcgggcgcacgagcatcgcg
cacacgcagccgcgccggatcgccgcgcgcacggtcgccgagcgcatcgccgccgagatg
gaggtcccgctcggcggggccgtcggctacaaggtccgcttcaccgaccaggtctcggcc
gagactcaggtcgcgctggtcaccgacggcatcctgctgaacgagatccaccgcgaccgg
atgctgcgccggtacgacacgatcatcatcgacgaggcgcacgagcgctcgctcaacatc
gactttctcctcggctacctgcgccgcatcctcccccgccgccccgacctgaaggtcatc
gtcacctcggcgacgatcgaccccgagagcttcgccgcgcacttcgccgacgcccagggc
gcccccgcgccgatcgtcgaggtctcgggtcgcacgtaccctgtcgaggtgcggtaccgg
ccgcacgacgactccggcgatgacgagacggccacggacgacgtcgacgggctcgtcgcg
gctctgcgcgagctcgaccgcgaagccgacggcgacgtgctcgtcttcctccccggagaa
gccgagatccgcgacgctatggacgccgtgcgctcggcatatgcgaaggatgcccgcccg
accgaggtgctgccgctctacgggcggctctccgccgcggagcagcaccgcgtcttcgag
ccctcgcgggtggcgggggtgcggcgccgggtcatcctcgccaccaacgtcgccgagacg
agcctgaccgttcccggcatccgctatgtcgtcgacgcgggcacggcacgcatctcgcgc
tacagcaaccggtcgaagatccagcggttgccgatcgaggccgtgtcgcaggcatcggcg
cagcagcgcgccggtcgagccggccgaacgtcggcgggtatcgccatccggctctacgcc
gaggatgacttcacctcgcgtccggagttcaccgagccggagatcctccgcacctccctc
gcgtcggtggtccttcagatgctcgcgctcggattcggcgacatcgcggacttcccgttc
ctgaccccgccggactcccgcggcgtgaaggccgccttcgatctgctcgtggagctgcgg
gcggtgcgccgcgatgagaagggcgcctggcggctgacggacaccggccgcgagatctcg
cgtctgccgatcgatccgcgattcgcgcgcatgctggtcgaggcgcgcgccctcggcgtg
acccgcgacgtcctcgcgatcgtggcgggcatgtcgatccaggatgtccgcgagcgcccg
gaggaacgacgcgaggaagccgaccggctgcacgcgcggttcaccgacccgacgagcgac
tttctgacgctgctgaacctgtggaaccacctccaggatcagcagcgcgagctcggctcc
agcgcgttccgccgcacctgccgggcggagcacctgaactacgtacgcgtccgggagtgg
ttcgacgtccaccgccagctcagcacgctcgcccgcggcgatcgcgaccgcggaaagcgc
ggacgcgacgagccctcctcggacggaacgggcgcggcgcatcccgaccgcgtccaccgg
gcgatcctcgccggtctcctctcgcagatcggtgtgctcgacacccggagcaccgcgacc
gcccgcgccgcgaccggccgaagcggcgggggcaagccgacgcgtccgcgcgccgagtac
cgcggcgcgcgcggcgcgaagttcgcgatcttccccgggtcgggcttgcgcaaggcctcg
cccgacgcggtgatggccgccgagctcgtcgagacgtcgcgactgtatgcgcgcacggtc
gccgcgatcgatcccgcctgggccgaggaactcgccggagatctcgcccaccggtcgatg
agcgacccgcactggtcgaaggatgccggggccgccgtcgccgccgagaaggtcaccctc
ttcggtgtcgagatcgtcccacgccgccgcgtgcagctcgccggacgcgaccgcgagctc
gcacgcgaactgttcctgcgccacgcgctcgtcgagggcgactggaactccgcgcacctc
gacaagcgcctgaccgcgttcgagcgacgcaacctcgaactgcggcgacgcctcgagaag
atcgaggagcgcgagcggcgccgcgacatcctcgtcggcgacgaggcggtcttcgccttc
tacgacgcccgcatcccgcgcgacgtgttcgacgtgcggtcgttcgaggcgtggtggcgc
gatgccgcagcacgcacgccgcgcctgctcgacatgaccgagggcgacctggccggggat
gccgcgggcagcgacgaacgcgccttccccgcgcgctggcgacagggcgatcaggtgctg
tcgctcgcctaccgcttcgaaccgggcgctcccgatgacggcgtcagcgtcgtcgtgccg
ctcgcgctgctcgcctccctccgccccgacggcttcgactggcaggtgccggggctgcgc
gacgagctgatcgcggggctcctgcgcgcactccccaaggcgatccgtcggcatgtcgtc
cccgccgccgactgggcatcgcggttcgccgaggagctggccggcgatggccccgagtca
cacgacggccttcccgcacgcaccctgcgcgacgcgctcgccgctcgcatccagcgcgtc
gcgaaccagcccgtcacggcggccgacttcgacctcgaacgcgtgcccgcccacctgtcg
atgtcgttccgcgctgtcgacgagcgcgggcgcccgctcggctcgtcgcgcgacctcgcc
gagctgcagcaacggctcgccaaccgcagccgcgcctccgtcgcgcgttcgctcgcgaag
gccgccccgcgtcccggagcccagcccgccgcagcgtcacccgccgcaggatctcccgcc
ggggcgacggccgcggggccggcgggcgaccagcggtcgggcatcgccgagcagaccggc
ctgaccgactggactttcggcgaccttcccgagctcgtcgacacgagggtcgccggcggc
gtcgtgcgcggataccccgccctcgtcgacgagggagcctccgtcgccctgcgcatcgag
gcgaccccggagcgggcccgccgcctgacccgcgcgggcgtccggcggctcgtcctgctg
tccgtcccgtctccggcgacctatgtcctcgatcacctcacggcgcccgagaagctcgcg
ctcgcggcatccccgtacccgtcggccaaggcgctcatcgaagacgcgcgcgtcgccgtg
gccgatgccgtcatcgaccgcaccgcggcatccgtccgcacgccggcgcagttccaggcg
gtgcgcgacgccttctcggcggctgtcgtcgacgagctgttccagaccgtctcgctcagc
gcacgcatcctcacccttcagcgcgacgtcgagcgggcgatccgcaaggagaactcgatg
gtcctgctcgccgctctcggcgatgtgaagcagcagctcgccgggctggtgttccccggg
ttcctctcgcggacgggaaccgcccgtctcgcgcacctgccccgctacctccagggcgcc
ctcgatcgcgtgtcgaccctgagcgacaatcccggacgcgaccggcagcgcctcacggag
ttcgagcgcgccgcggcgctcttcgccgaggcgggcgggacgatcccgccggccgacgac
gctcccgcgaacctccggcatgcccgatggctgctcgaggagtaccgtgtgagcctgttc
gcccagcgcctgggcaccgccgagccggtatcgatccagcggatcaccaagacgctcgcc
ggcacgggctga
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