Microbacterium paludicola: BO218_01885
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Entry
BO218_01885 CDS
T04601
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpal
Microbacterium paludicola
Pathway
mpal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BO218_01885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpal03400
]
BO218_01885
Enzymes [BR:
mpal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BO218_01885
DNA repair and recombination proteins [BR:
mpal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BO218_01885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
RecG_dom3_C
UB2H
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
APF33104
LinkDB
All DBs
Position
396169..399747
Genome browser
AA seq
1192 aa
AA seq
DB search
MRALSQADSFREAVTSGAVGSLDYSLVDGLDAPLLAALLEQRRRDGRPAVVLAVAPTGRR
AETLGAALQCLVPEAEIVHFPAWETLPHERLSPSPETVGRRLAALRRAAAHDGSAPLVIT
ASVRAALQPLAAGLTDADPVSLSVGARGSDLEQVVRRLVELAYHRVDMVSRRGEFAVRGG
ILDVFPAAADHPLRIDFFGDEVDQIRAFSIADQRSLPGEVGEAVLLPARELLLTPAARER
AAAMAPTFPSLTGMLEKMSQGIPVEGMESLLPALAEGIVPLVDYLPRGSAIALVDPERSR
TRARTLGETNREFLEAAWSAATAGADSPVDLGAGDFLTLPALRDAMRERSGVWWTLSAFD
SGAADAAGEGLTETGDDLRVDGSAVPSFQGNVDGATAHIGDLLARGWRVVVCASGPGLVD
RARDVMAERGIAARTSDGVAELSDEAVAVCVVASLERGFESAEAKLAVLTESEFYGRTIG
SDGRVVKKLATRRRNVVDPLQLKPGDVVVHSTHGIGKFVELVQREVSSGGRNAVKTQREY
LVLEYAPAKRGYPGDKLFVPTDQLDQLSRYVGGEAPVLSKMGGSDWAAAKGKARKAVRDI
AVELVKLYSARMASKGHAFGPDTPWQRELEEAFPFAETPDQLQTIDEIKADMEKPIPMDR
LLSGDVGFGKTEVAVRAAFKAIQEGKQVAMLVPTTLLAKQHLETFTERFAGFPVKVRPLS
RFQTAKQARETVDGLADGTVDMVIGTHRILTEKVAFKDLGLLIIDEEQRFGVEHKDSLKK
LKTGVDILAMSATPIPRTLEMAVTGIREMSTLATPPEERHPILTYVGPRSDKQIAAAIRR
ELLREGQVFFVHNRVQSIQRVAAQLGELVPEARIAVAHGQMGEHQLEQVVDDFWERRADV
LVSTTIVETGLDISNANTIIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDENKPLSE
TAADRLETIAVNNDLGSGMQVALKDLELRGAGNLLGAEQAGHIAGVGFDLYLRMIGEAVS
TFRGEEVDGPAELRLELPVAARIPEDYIDSERLRLEAYQKLSAAAAVSAKDDAIDLVVEE
LTDRYGRPPAEVEGLLAVARLRRRAAQAGLTDVVAMGPNLRVAPARLPESMRIRLQRLYP
KAKLLAGGEALVVPLPTAGGAALGDADLIAWTGQLLEQLFPVATTAASSAAS
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcgccctttcgcaggctgactccttccgggaggcggtgacatccggagccgtcggc
agtctcgactactcgctggtcgacgggctcgacgcccccctcctcgcggctctgctcgag
cagcgccgccgcgacggtcgacccgctgtcgtgctcgccgtcgctcccaccggtcgccgc
gccgagaccctcggtgccgcgctgcagtgcctcgtccccgaggccgagatcgtgcacttc
cccgcctgggagaccctgccgcacgagcggctgagcccgagccccgagaccgtcggacgc
cgtctcgccgcgcttcgccgtgcggccgcgcacgacggcagcgcaccgctggtcatcacg
gcctccgtccgcgcggccctgcagccgctcgcggccggtctgaccgacgccgacccggtg
tcgctgtcggtcggagcgcgggggagcgacctcgaacaggtggtccggcgcctcgtcgaa
ctcgcctatcaccgggtcgacatggtctcccgtcgcggcgagttcgcagttcgcggcggc
atcctcgatgtctttccggccgcggccgaccacccgctgcgcatcgacttcttcggcgac
gaggtcgatcagatccgcgcgttctccatcgccgaccagcgatcactgcccggcgaggtc
ggcgaggccgtgctcctgccggcgcgtgagctgctgctgacgccggccgcccgcgagcgg
gctgcggcgatggccccgaccttcccgagtctgacgggcatgctcgagaagatgtcgcag
ggcatccccgtcgaggggatggagtcgctgctgcccgcgctcgcagagggcatcgtgccg
ctcgtcgactatctgccccgcggctcggcgatcgctctcgtcgaccccgagcgctcgcgc
acgcgggcgcgcaccctcggtgagaccaaccgcgaattcctcgaagcggcctggagcgcg
gcgaccgccggggctgacagccccgtcgatctcggcgcgggcgacttcctgaccctcccc
gctttgcgcgacgcgatgcgcgagcgatccggggtgtggtggaccctcagcgccttcgac
tcgggagcagcggatgccgccggcgaggggctgaccgagaccggcgacgacctgcgtgtc
gacggcagcgcggtgccctcgttccagggcaacgtcgacggtgccaccgcccacatcggc
gacctgctggcgcgcggctggcgcgtcgtcgtctgcgcctcgggtcccgggctcgtcgac
cgggcccgcgacgtgatggccgagcgcgggatcgccgcccgcacgagcgatggcgtcgcc
gagctctccgacgaggccgtcgcggtctgcgtcgtggcatcgctcgagcgcggtttcgag
tcggccgaggcgaagctcgccgtcctcaccgagagcgagttctacggccgcacgatcggc
agcgacggccgcgtggtgaagaagctcgcgacgcggcggcgcaacgtcgtcgacccgttg
cagctgaagcccggcgacgtcgtcgtgcactccacccacggaatcggcaagttcgtcgag
ctcgtccagcgtgaggtctccagcggggggcgcaacgcggtgaagacccagcgcgagtac
ctcgtgctcgagtacgcgcccgccaagcggggctatcccggcgacaagctcttcgtgccg
accgatcagctcgaccagctctcgcggtacgtcggcggcgaggccccggtgctgtcgaag
atgggcggcagcgactgggcggccgcgaagggcaaggcgcgcaaggccgtccgtgacatc
gccgtcgagctcgtcaagttgtactcggcgcgcatggcgtcgaaggggcacgcgttcggc
cccgacaccccgtggcagcgcgagctcgaagaggcgttccccttcgcggagacgcccgac
cagctgcagacgatcgacgagatcaaggccgacatggagaagccgatcccgatggatcgc
ctgctctcgggcgacgtcggattcggcaagaccgaggtcgccgtccgcgccgcgttcaag
gcgattcaggaggggaagcaggtcgcgatgctggtcccgaccacgcttctcgcgaagcag
catctcgagacgttcaccgagcgcttcgccggattcccggtgaaggtgcgccccctgtcg
cggttccagaccgcgaagcaggcccgcgagacggtcgacgggctcgccgacggcaccgtc
gacatggtcatcggcacccaccgcatcctgaccgagaaggtcgccttcaaggatctcggg
ctcctcatcatcgacgaggagcagcggttcggcgtcgaacacaaggactcgctgaagaag
ctgaagaccggcgtcgacatcctcgcgatgagcgcgacgccgatcccgcgcacgctcgag
atggcggtgaccggtattcgggagatgtcgaccctggcgaccccgcccgaggagcggcat
ccgatcctcacctacgtcggaccgcgcagtgacaagcagatcgcggccgccatccggcgc
gagctgctgcgcgagggccaggtgttcttcgtgcacaaccgggtgcagtcgatccagcgg
gtcgcggcgcagctcggtgagctggtgcccgaggcgcgcatcgccgtcgcgcacggccag
atgggggagcaccagctcgagcaggtcgtggacgacttctgggagcggcgtgccgacgtc
ctcgtctcgacgacgatcgtcgagacggggctcgacatctccaacgcgaacaccatcatc
atcgaccgggccgacaagtacgggctgagccagctgcaccagctgcgcggccgggtcggg
cgcgggcgcgagcgcgcgtacgcgtacttcctctacgacgagaacaagcccctcagcgag
acggccgccgaccgcctcgagacgatcgccgtcaacaacgacctcggctcgggcatgcag
gtcgcgctgaaggacctcgagctgcgcggcgcgggcaatctgctgggcgccgagcaggcc
ggccacatcgccggggtcgggttcgacctctatctgcggatgatcggcgaggccgtctcg
acgttccggggcgaggaggtcgacgggccggccgagctgcggctcgagctgcccgtggcc
gcgcgcattcccgaggactacatcgacagcgagcgcctgcgcctcgaggcgtatcagaag
ctctcggcggcggcagccgtcagcgccaaggacgatgcgatcgacctcgtggtcgaagag
ctcaccgaccggtacgggcgcccgccggccgaggtggagggtctactcgcggtcgcccgg
ctgcgccggcgcgcagcccaggccgggctgacggacgtcgttgcgatgggaccgaatctt
cgggtcgcgccggcccggctgcccgagtcgatgcgcatccggctgcagaggctgtacccc
aaggccaaactgctcgccggcggcgaagccctcgtggtcccgctgccgaccgccggcggt
gccgcgctcggcgatgccgacctcatcgcgtggacgggtcagctgctcgagcagctcttc
ccggtcgccacgacggcggcgtcgtccgccgcatcctga
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