Microbacterium paludicola: BO218_13005
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Entry
BO218_13005 CDS
T04601
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mpal
Microbacterium paludicola
Pathway
mpal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mpal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BO218_13005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpal03021
]
BO218_13005
03400 DNA repair and recombination proteins [BR:
mpal03400
]
BO218_13005
Enzymes [BR:
mpal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BO218_13005
Transcription machinery [BR:
mpal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BO218_13005
DNA repair and recombination proteins [BR:
mpal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BO218_13005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
YlqD
BRE1
DUF1690
Motif
Other DBs
NCBI-ProteinID:
APF34997
LinkDB
All DBs
Position
2745696..2749568
Genome browser
AA seq
1290 aa
AA seq
DB search
MLESHTFDQLRIGLATADDIRRWSFGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEDARHRDLPTHENNLRLEIKNLGDRRDARVASRLAKLEEE
LATLEADGAKADQKKKAKDSAEKDMATVRKNFDEQISRLERVWEEFRSLEVGQLKQEDDV
FHELQDRFGQYFEAYMGAEGIQRRLASFDLAAEADSLHLQISEGKGQRKIRAIKRLKVVN
SFLQTGMSPASMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLGHSQNIKAAKRAVERTR
PEVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPSQDMIIGLHHLTTVIEGAKGEGR
VFGSVGEAILAKDEGTLDLQAKVRIRIPGLAFLEGDAPEGYERHGLVDASLGQAIFNDTL
PKGYPFVREQADKGKLSQIVNKLAEEYPKTEVAASLDRIKDAGFHWATRSGVTVALSDVL
TPPNKAEIISKYEKLASKVQGQFEKGLVTDAERRQEQIKIWTEATDEVQAAMKANFPAEN
TINRMVSSGARGNWLQIRNIAGIRGLVNNTKGEIMPRPIISSYREGLSVAEYFTATHGAR
KGLADTALRTADSGYLTRRLVDVSQDVIIREDDCGTSKGLELPIAAAGADGALIKDANVE
NSVFARTLAADAVSPSGEVLAAAGDDVGDVLINKLVEGGVTSIKVRSVLTCDSAVGVCAK
CYGRSLATGKIVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQELF
EARTPKGASPISEVTGRVTIDETEKSKKIIITPDNGDEPVVYPVLKRATLLVEDGQHVEV
GDPLQVGTLDPKDIMRVQGAREVQKYLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTV
VDHGDTTLLPGELVDFKRYQQINREAVGEGKRPASGRPELMGITKASLATESWLSAASFQ
ETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLAKYRNVAVEATEEAKSERYPNRI
FASDGAYSDADLSYVDFDSFSTDGDFTSYN
NT seq
3873 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgagtcacacaccttcgatcagcttcgcatcggcctggccactgctgacgacatc
cgtcgttggtccttcggcgaggtcaagaagcccgaaaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttcggcgagcagatcttcggcccctcccgcgactgggagtgc
gcctgcggaaagtacaagcgcgtccgcttcaagggcatcgtctgcgagcgctgcggcgtc
gaggtcaccaagtcctcggtccgtcgtgagcgcatgggccacatcgagctcgccgctccc
gtgacccacatctggtacttcaagggcgtgccctcgcgcctcgggtacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatggtcatctcggtcgat
gaggatgcgcgtcaccgcgacctccccacccacgagaacaacctccgcctcgagatcaag
aacctcggcgaccgccgtgacgcccgcgtggcgtcgcgtctggccaagctggaggaggag
ctcgcgaccctcgaggccgacggcgccaaggccgaccagaagaagaaggccaaggactcc
gccgagaaggacatggcgacggtccgcaagaacttcgacgagcagatctcgcgcctcgag
cgggtgtgggaggagttccgctccctcgaggtcggccagctcaagcaggaggacgacgtc
ttccacgagctgcaggaccgcttcggccagtacttcgaggcctacatgggcgccgagggc
atccagcgccgcctcgcgtcgttcgacctggccgccgaggccgactcgctgcacctgcag
atctctgagggcaagggccagcgcaagatccgtgcgatcaagcgcctgaaggtcgtcaac
tcgttcctgcagaccggcatgtcgccggcctcgatggtgctcgacgtcgtcccggtgatc
ccgccggagctgcgtccgatggtccagctcgacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgtctgcgtcgtctgatcgacctc
ggggctcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctcttcgacaacggccgtcgcggtcgcccggtcaccggtaccggcaaccgcgcgctgaag
tcgctgtcggacatgctcaagggaaagcagggacgtttccgtcagaacctgctcggaaag
cgcgtcgactactcgggtcgttcggtcatcatcgtcggaccccagctgaagctgcaccag
tgcggtctgcccaagcagatggctctcgagctcttcaagccgttcgtcatcaagcgcctg
atcgacctcggtcactcgcagaacatcaaggcggccaagcgggccgtcgagcgcacgcgt
cccgaggtctgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctcaaccgt
gcacccaccctgcaccgcctgggcatccaggccttcgagccccagctcgtcgagggcaag
gcgatccagctgcacccgctcgtgtgcgccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctgccgctctcggtcgaggctcaggccgaggcccgcatcctgatgctc
gcgtcgaacaacatcctcaagccctccgacggccgtccggtcaccctgccctcgcaggac
atgatcatcggcctgcaccacctgaccacggtcatcgagggtgccaagggcgagggtcgc
gtgttcggctccgtcggcgaggcgatcctggcgaaggacgagggcaccctcgacctgcag
gccaaggtccgcatccgcatccccggtctcgcgttcctcgagggcgacgcccccgagggc
tacgagcgccacggtctggtcgacgcgtcgctcggacaggcgatcttcaacgacaccctg
cccaagggctacccgttcgtccgcgagcaggccgacaagggcaagctgtcgcagatcgtc
aacaagctggccgaggagtaccccaagaccgaggtcgcggcatccctcgaccggatcaag
gacgccggcttccactgggcgacccgttcgggcgtcaccgtggcgctcagcgacgtcctg
acgccgccgaacaaggccgagatcatctcgaagtacgagaagctcgcgtcgaaggtccag
ggccagttcgagaagggtctcgtgaccgacgccgagcgtcgccaggagcagatcaagatc
tggaccgaggcgaccgacgaggtccaggccgccatgaaggcgaacttcccggccgagaac
accatcaaccgcatggtctcgtcgggcgcccgtggtaactggctgcagatccgtaacatc
gccggtatccgaggcctggtcaacaacaccaagggtgagatcatgccgcgtccgatcatc
tcctcgtaccgcgaggggctgtcggtggcggagtacttcaccgcgacgcacggtgcccgt
aagggtctggccgacaccgctctgcgtaccgccgactcgggttacctgacccgtcgtctg
gtggacgtctcgcaggacgtcatcatccgcgaggacgactgcggcacctcgaagggcctc
gagctcccgatcgccgcagccggcgccgacggcgccctcatcaaggacgccaacgtcgag
aactcggtgttcgcccgtacgctggcggccgacgccgtctcgccctcgggcgaggtgctg
gccgcggccggcgacgacgtgggcgacgtgctgatcaacaagctcgtcgagggcggggtg
acctccatcaaggtccgctcggtcctgacctgcgactccgccgtcggcgtctgcgcgaag
tgctacggccgttcgctggccaccggcaagatcgtcgacatcggcgaggcggtcggcatc
atcgccgcccagtcgatcggtgagcccggtacccagctgacgatgcgtaccttccacacc
ggtggttcggcttcggccgatgacatcacgcagggtctgccccgcgtgcaggagctcttc
gaggcccgtacccccaagggtgcgtccccgatctccgaggtcaccggccgcgtgacgatc
gacgagaccgagaagtcgaagaagatcatcatcacgcccgacaacggcgacgagcccgtg
gtctacccggtcctcaagcgtgcgaccctcctcgtcgaggacggccagcacgtcgaggtc
ggcgacccgcttcaggtcggcacgctcgacccgaaggacatcatgcgcgtgcagggtgcc
cgtgaggtgcagaagtacctcgtcggcggcgtgcagggcgtgtaccgctcgcagggcgtg
ccgatccacgacaagcacatcgaggtcatcgtccgtcagatgctgcggaaggtcaccgtg
gtcgaccacggcgacacgacgctgctgccgggtgagctggtcgacttcaagcgctaccag
cagatcaaccgcgaggcggtcggcgagggcaagcgtcccgcgtcgggtcgtcccgagctg
atgggtatcaccaaggcgtcgctcgcgacggagtcgtggctgtcggccgcgtcgttccag
gagaccacccgcgtcctcacgcaggcggccatggagggcaagagcgacccgctcgtcggc
ctcaaggagaacgtcatcatcggaaagctcatccccgccggaacgggccttgcgaagtac
cgcaacgtggccgtcgaggcgacggaggaggcgaagagcgagcggtaccccaaccgcatc
ttcgcgtcggacggcgcgtacagcgacgccgacctgagctacgtcgacttcgacagcttc
tccaccgacggcgacttcaccagctacaactga
DBGET
integrated database retrieval system
