Microbacterium paraoxydans: IZR02_09715
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Entry
IZR02_09715 CDS
T08796
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mpao
Microbacterium paraoxydans
Pathway
mpao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IZR02_09715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpao03019
]
IZR02_09715
03009 Ribosome biogenesis [BR:
mpao03009
]
IZR02_09715
Enzymes [BR:
mpao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IZR02_09715
Messenger RNA biogenesis [BR:
mpao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IZR02_09715
Ribosome biogenesis [BR:
mpao03009
]
Prokaryotic type
rRNA processing factors
IZR02_09715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
S1
Rootletin
Motif
Other DBs
NCBI-ProteinID:
QXE28683
LinkDB
All DBs
Position
complement(2017006..2019459)
Genome browser
AA seq
817 aa
AA seq
DB search
MADENNDNNAPALDAPADAAEPLTAPTDAAELEAESEAPAAQALTEDAPAESEAPAESET
PAESEAPAESEAPAEPETPAEPETPAEPETPAESEAPAEPEAPAEPEAPAQPVKPAAVTA
VSLGLLPEVFVSQVSTQLHFYAPEIVPLPARPGRDDRTPERDQDESGGGRRGRRRRGGSE
GDDQRDEPRQRQRVVEYITEPKAIKGSTRLEAKKQRRRDGRDAGRRRPVVTEAEFLARRE
SVDRKMVVRSKNGRTQIGVLEDGVLVEHYVARNQDASLIGNVYLGRVQNVLPSMEAAFVD
IGRGRNAVLYSGEVDWDGVETGNQPRRIELALKPGDRVLVQVTKDPVGHKGARLTSQISL
PGRYLVYVPGGSMNGISRKLPDNERARLKRILKEVLPESSGVIVRTAAEGATEEQLTRDV
QRLTSQWEHIQKQVESQQAPALLHAEPDLLVKIVRDVFNEDFTKMLIQGEESQRTIRAYL
ESVAPDLLERVEAYEDDVDPFDAFRITEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVN
TGKFVGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLI
ECLSRDRTKHQVAEVTSLGLVQMTRKKLGLGLLETFSEACEVCAGRGVIVHHDPVVKHRA
NGNGNNNNNGGNGNGGRRQRGNGGNGNGNGGGNHSAPAAPPVTHSITEGAKSALAQIAAS
TIAPAGDAVAEAPAAEPAPAPASERPKKARKKRGDRKGPKTPTEELLDSVLDALPEPKAP
GQGRGRRRVTTAALSGTPVSVSSEASVAPVASADPEA
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgagaacaatgacaacaacgcccccgccctcgacgccccggctgatgccgcg
gagccgctgacggcgcccaccgacgccgcagagctcgaggcggagagcgaggctcccgcg
gcgcaggctctgacggaggatgctcctgccgagtccgaggctcccgcggagtcggaaact
cccgcggagtccgaggctcccgcggagtccgaggcgcctgccgagcccgaaactcctgcc
gagcccgaaactcctgccgagcccgaaactcctgccgagtccgaggctcctgccgagccc
gaggcccctgccgagcccgaggcccctgcgcagccggtgaagcccgcggccgtcaccgcg
gtgtcgctcggactgctgcccgaggtcttcgtgtcgcaggtgtcgacccagctgcacttc
tatgcaccggagatcgtcccgcttcctgcccgccccggtcgtgacgaccgtacgccggag
cgcgaccaggacgagtccgggggagggcgccgcgggcgtcgtcgccgcggcggctccgag
ggcgatgaccagcgcgacgagccgcggcagcgccagcgcgtcgtcgagtacatcaccgag
ccgaaggcgatcaagggctcgacgcgcctcgaggccaagaagcagcgccgtcgtgacggc
cgcgacgccggtcgtcgtcgtccggtcgtgaccgaggccgagttcctcgcacgccgggag
tccgtcgaccgcaagatggtcgtgcgctccaagaacggccgcacgcagatcggggtgctg
gaggacggcgtgctcgtggagcactacgtcgcccgcaatcaggacgcctcgctgatcggc
aacgtctacctcggtcgcgtgcagaacgtgcttcccagcatggaggccgcgttcgtcgac
atcggtcgcggccgcaacgccgtgctctactcgggcgaggtcgactgggacggcgtcgag
accggcaaccagccccgtcgcatcgaactggcgctcaagccgggcgatcgcgtgctcgtc
caggtcaccaaggaccccgtggggcacaagggcgcccgcctcacgagccagatctcgctg
cccggccgctacctggtgtatgtgcccggcggctcgatgaacggcatcagccgcaagctg
cccgacaacgagcgcgcgcgactcaagcgcatcctcaaggaggtgctgccggagtcgtcc
ggcgtgatcgtccgcacggcggccgagggcgccaccgaggagcagctgacccgcgacgtg
cagcgcctcacctcgcagtgggagcacattcagaagcaggtcgagagccagcaggccccc
gcgctcctgcacgccgagcccgacctgctcgtgaagatcgtccgtgatgtcttcaacgag
gacttcacgaagatgctcatccagggcgaggagtcgcagcgcacgatccgggcgtacctg
gagagcgtcgcgcccgacctgctcgagcgcgtcgaggcctatgaggacgacgtcgacccg
ttcgacgcgttccggatcaccgagcagatcgagaaggcgttggatcgcaaggtctggctg
ccctccggcggctcgctcgtgatcgaccgcaccgaggccatgacggtcgtcgacgtcaac
accggcaagttcgtcggctcgggcggaaacctcgaggagaccgtcaccaagaacaacctc
gaggccgcggaggagatcgtccgccagctgcgtctgcgggacatcggcggcatcatcgtc
gtcgacttcatcgacatggtgctggagtccaaccgcgacctcgtgctgcgtcgactcatc
gagtgcctgagccgcgaccggacgaagcaccaggtcgccgaggtcacctcgctcggtctc
gtgcagatgacgcgcaagaagctcggcctcggcctgctggagaccttcagcgaggcgtgc
gaggtgtgtgcgggtcgcggcgtgatcgtccaccacgacccggtcgtgaagcaccgcgcg
aacggcaacggcaacaacaacaacaacggcggcaacggcaacggcggacgccgccagcgc
ggcaacggcggcaacggcaacggcaacggcggcggaaaccactccgcccccgccgccccg
ccggtgacccacagcatcaccgagggggccaagtcggccctcgcgcagatcgccgcgtcc
acgatcgcgcctgccggtgacgcggtcgccgaggctccggccgccgagcccgcaccggct
cccgcgtcggagcgcccgaagaaggcccggaagaagcgcggggaccgcaaggggccgaag
acgccgaccgaggagcttctcgactcggtcctggacgcgctcccggagcccaaggcgccg
ggtcagggtcgtggacggcgtcgggtcaccaccgccgcgctctccggcacgccggtgtcc
gtgagctcggaggcgtcagtggcgccggtcgcgtccgcggacccggaggcctga
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