Methylocystis parvus: F7D14_02730
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Entry
F7D14_02730 CDS
T06304
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mpar
Methylocystis parvus
Pathway
mpar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F7D14_02730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpar03019
]
F7D14_02730
03009 Ribosome biogenesis [BR:
mpar03009
]
F7D14_02730
Enzymes [BR:
mpar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F7D14_02730
Messenger RNA biogenesis [BR:
mpar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F7D14_02730
Ribosome biogenesis [BR:
mpar03009
]
Prokaryotic type
rRNA processing factors
F7D14_02730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QGM96501
UniProt:
A0A6B8M0X8
LinkDB
All DBs
Position
complement(575249..578290)
Genome browser
AA seq
1013 aa
AA seq
DB search
MANKMLIDASHPEETRVVVLRGNRVQEFDFEAADKKPLRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPVADRQALLEEESRAHREHEEEEHRPHGGGGRRRSRRRQ
HEGAEKRAAADEALISEPVDVEALIEAAQDHEGESASAEAGEGETVAAGEAVAESPVAEA
APEEPVEDAAPTDVEVEAEAVAAAEVAEPAALEETHHTISVDPAGFGSVEEGSPEEFGDE
ASAPDHEMKARRQDERDEEREREEAGAHEEDGDDDADDAVEARAPSRESQDDDHDDEEHD
EEEHVEHIGGDAMDEAPFRVVRPRRQYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYLS
LAGRYSVLMPNTARGGGISRKITDGADRKRLKEIVHDLEVPEGMGVILRTAGATRTKAEV
KRDFEYLLRLWESVRELTLRSSAPTLVYEEGSLIKRAIRDLYGRDVEEIVVSGDDAYREA
KDFMRMLMPSHAKNVKQHREPVPIFAEAGVEAQLDAMFSNHVTLKSGGYLVINQTEALVA
IDVNSGRSTREHNIEDTALRTNLEAADEVARQLRLRDLAGLIVVDFIDMEEGRNNRAVER
RLKDALKNDRARIQVGRISHFGLLEMSRQRIRAGVVEGSTVQCPHCMGAGHVRSTASIAL
HVLRVLEEALLKSAAHDVTLRTRAVVALYILNQKRAHLQALENRFGVHITVAADDTLTGA
NYHALERGEPASGPRIPTAPAPLRVDSIQAEPIEDEILEDEAPIDEEAADGGDEEASAGG
RREGREPRRFNGEEGEEGAARSRRRRRRRGRGGQNGNGELMAPEAEQPSDEGLAFMAAIE
GQPAPRENREPRRGRGPGRWRRSAPLPEEFRDPSELFPLDEGAQALEGEVSPREAHMPDF
APEAEPASDASVVSESGAPQIEATEAPTSEAVPVVAAAPEEAPKVEAAEATPRQAPTPEA
SEAAAAPRNRPESAQDFPAGLRPAGNDAEYLQRRPSHAARRATPSATSASGPA
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaaaatgctgatcgacgcctcccacccggaggaaacccgggtggtggtgctg
cgcggtaaccgcgttcaggaattcgacttcgaggctgccgacaagaaaccgctccgcggc
aatatctatctcgccaaggtcacgcgcgtggagccgtcgctccaggccgccttcgtcgat
tacggcggcaaccgtcacggcttcctcgccttcgctgaaattcaccccgactactatcaa
atccctgtcgccgaccgtcaggcgctgctcgaggaagagagccgcgcccatcgcgagcac
gaagaggaagagcatcgcccgcatggcggcggcggtcgccgccgctcgcgccgccggcag
catgagggcgccgagaagcgcgccgccgccgacgaggcgctgatcagcgagcccgtcgac
gtcgaggctctcatcgaggcggcccaggaccacgagggcgagagcgcgtccgccgaggcc
ggcgagggcgagacggtcgccgctggcgaggccgtcgccgaaagcccggtcgcggaagcc
gcgcccgaagagcccgtcgaggacgccgccccgaccgacgtcgaggtggaggccgaggcg
gtcgcggcggcggaagtcgccgagcctgcggctctcgaggagacgcatcacaccatctcc
gtcgatccggcgggcttcggttcggtcgaagaaggttcgcccgaggaatttggcgacgag
gcgtcggcccccgaccatgagatgaaggctcgccggcaggacgagcgcgacgaagagcgc
gagcgcgaggaggccggcgcgcatgaggaggacggcgatgacgacgccgacgacgccgtc
gaggcccgcgcgccgtcgcgcgagtcgcaagacgacgatcatgacgacgaggagcatgac
gaggaagagcatgtcgagcacattggcggcgacgccatggatgaggctcctttccgcgtc
gtgcgcccgcgccgccagtacaaaatccaggaagtcatcaagcggcgccaggtgctgctc
gtccaggtcgtgaaggaagagcgcggcaataagggcgccgcgctcacgacctatctctcg
ctggccggccgctattcggtgctgatgccgaacacggcccgcggcggcggcatttcgcgc
aagatcaccgacggcgccgaccgcaagcgcctcaaggaaatcgtccacgacctcgaagtt
ccggaagggatgggcgtcatcctgcgcacggccggcgcgacgcgcaccaaggccgaggtc
aagcgcgacttcgaatatctgctcaggctgtgggagagcgtgcgcgaattgacgttgcgc
tcttcggcgccgacgctcgtctatgaagaaggctcgctgatcaagcgcgccatccgcgat
ctctatggccgcgacgtcgaagagatcgtcgtctccggcgacgacgcctatcgcgaggcc
aaggacttcatgcgcatgctcatgccgagccatgcaaagaacgtgaagcagcatcgcgag
cccgtgccgatcttcgccgaggcgggcgtcgaggcgcagctcgacgccatgttctcgaat
cacgtcacgctgaaatccggcggctatctggtcatcaaccagaccgaggcgctggtcgcg
atcgacgtgaactcgggccgttcgacccgcgagcacaatatcgaagacacggcgctgcgc
accaatctcgaggcggcggacgaagtcgcccgtcaactgcgcctgcgcgatctcgccggc
ctcatcgtcgtcgatttcatcgacatggaggagggccgcaacaatcgcgcggttgagcgc
cggctcaaggatgcgctgaagaacgaccgcgcccgcatccaggtcggccgcatttctcat
ttcggccttttggagatgtcgcgtcagcgcatccgcgccggcgtcgtcgaaggctcgacc
gtgcagtgtccgcactgcatgggcgcgggccatgtccgctccaccgcctcgatcgcgctg
catgtgctgcgcgtgctggaggaggcgctgctcaagagcgccgcgcatgacgtgacgctg
cgaacccgcgcggtcgtcgccctctacatcctcaatcagaagcgcgcgcatctgcaggcg
ctggaaaatcgtttcggcgtccacatcacggtcgccgccgacgatacgctgacgggcgcc
aattatcacgcgctggagcgcggcgagccggcgtcaggcccgcggattccgacggcgccc
gcgccgctgcgcgtcgactcgatccaggccgaaccgatcgaggacgagattctcgaagac
gaggcgccgatcgacgaagaggcggccgatggcggcgacgaggaagcgagcgctggcggt
cgtcgcgagggcagggagccgcgccgcttcaacggcgaagagggcgaagaaggcgcggcg
cggtcgcgtcgccgtcgccggcgtcggggacgcggcggacagaacggcaatggcgaactg
atggcgccggaggccgagcagccctccgatgaaggcctcgccttcatggcggcgatcgag
ggtcagcccgcgccgcgcgaaaaccgcgaacctcgcaggggacgcggcccgggtcgttgg
cgccgctccgcgccgttgcccgaggagttccgcgacccgtccgaactgttcccgctggat
gagggcgcgcaggcgctcgaaggcgaggtctcgccgcgcgaggcgcatatgccggatttc
gcgccggaagccgagcccgcatccgacgcgtccgtcgtaagcgagagcggcgcgccgcag
atcgaagcgaccgaggcgccgacgtccgaagcggttccggtcgtcgccgccgcgccggag
gaagcgccgaaggtcgaagccgccgaggcgacgcctcggcaggcaccgactccggaggct
tccgaggcggccgccgctccgcggaatcgccccgagtcagcccaagatttcccggccggg
cttcggcccgccgggaatgacgcggaatatcttcagcgacgaccgagccacgccgccagg
cgcgcgaccccttccgcgacatccgcttccgggcctgcatag
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