Methylocystis parvus: F7D14_18840
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Entry
F7D14_18840 CDS
T06304
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mpar
Methylocystis parvus
Pathway
mpar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F7D14_18840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpar03019
]
F7D14_18840
Enzymes [BR:
mpar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F7D14_18840
Messenger RNA biogenesis [BR:
mpar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F7D14_18840
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
AAA_22
CheB_methylest
Motif
Other DBs
NCBI-ProteinID:
QGM99334
UniProt:
A0A6B8M5Q3
LinkDB
All DBs
Position
complement(3940528..3941880)
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AA seq
450 aa
AA seq
DB search
MTTFSDLGLPEILLRALSSEGYETPTSIQAQAIPHLLQGRDLLGIAQTGTGKTAAFALPI
LERFAAERRRPAPFTARALVLAPTRELAAQIADSFRAYGQFLRPSVGVIVGGVSHRPQID
MLARGLDVLVATPGRLLDHIASGRFKPGFTEVLVLDEADHMLDLGFIVPIRQIVAKLPKN
RQTLLFSATMPKEIAGLAQDMLNAPAQVSVTPVATTAERVDQHVYLVDGGAKRDILIELM
SDAAISRAIVFTRTKRGADRVAQHLDAAGVGAEAIHGNKSQSQRIRALDSFRKGRTRVLV
ATDIAARGIDVDGVTHVVNFELPEVPEAYVHRIGRTARGGASGRAISLCDNGERPLLRQI
EKLTRQSIPSTDRRSADQRHDDAQPARRVNRGNGGGGNGHGAARNAQKHPRREGPHREGQ
RPSGQRPANGQKRRAHGGGSNRPQASRPQG
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
gtgaccactttttccgatctcggcctgcccgagattctgcttcgcgccctctccagtgag
ggctatgaaacgccgacctccattcaggcccaagcgattccgcatcttttgcagggccgc
gacctccttggcatcgcccagacgggcaccggcaaaacggccgcttttgcgctgccgatc
ctggagcgcttcgccgccgagcggcgccgtcccgcgcccttcacggcgcgcgcgctcgtc
ctcgccccgacgcgcgaactcgccgcgcagatcgccgacagtttccgcgcctatggccag
ttcttgcgtccgagcgtcggcgtcatcgtcggcggcgtctcgcatcgcccgcagatcgac
atgctggcgcgtgggctggacgttctggtcgcgacgccgggccgtctgctcgatcacatc
gcttccggccggttcaagccggggttcacggaagtcctcgtgctcgacgaggccgaccat
atgctcgatctcggcttcatcgtcccgatccgtcagatcgtcgcgaagctgccgaagaac
cgtcagacgctgctcttctcggcgaccatgccgaaagaaatcgccggtctcgcgcaggac
atgctgaacgcgcccgcgcaggtttccgtaacgcctgtggcgacgacggccgagcgagtc
gatcagcatgtgtatctcgtcgacggcggcgccaagcgcgacattctcatcgagctgatg
agcgacgccgcgatttcgcgcgccatcgtcttcacccgcaccaagcgcggcgccgatcgg
gttgcgcagcatctcgacgccgccggcgtcggcgcggaggcgattcacggcaataagagc
cagagccagcgcatccgcgcgctcgactctttccgcaagggccgcacgcgcgttctcgtc
gcgacggacatcgccgcgcgcggcatcgacgtcgacggcgtgacgcatgtcgtgaatttc
gaactgccggaagtgccggaagcctatgtccaccgcatcggccgcacggcgcggggcggc
gcttccgggcgcgccatatcgctttgcgacaatggcgagcggccgctgcttcgccagatc
gagaagctgacgcgtcagtccataccctcgaccgatcgtcgcagcgccgatcagcgccat
gacgatgcgcagccggcgcggcgcgtcaatcgcggcaatggcggcggcgggaatgggcac
ggcgcggcgcgcaacgcgcaaaagcatccgcgccgcgaggggccgcatcgcgagggacag
cgtccgagtggtcagcgaccggccaacggacagaagcggcgggcgcatggcggtgggagc
aatcgtccgcaggccagccgtcctcaggggtaa
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