Mycolicibacterium parafortuitum: MPNTM1_05416
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Entry
MPNTM1_05416 CDS
T11082
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mpat Mycolicibacterium parafortuitum
Pathway
mpat03420
Nucleotide excision repair
mpat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MPNTM1_05416
03430 Mismatch repair
MPNTM1_05416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpat03400
]
MPNTM1_05416
Enzymes [BR:
mpat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MPNTM1_05416
DNA repair and recombination proteins [BR:
mpat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MPNTM1_05416
MMR (mismatch excision repair)
Other MMR factors
MPNTM1_05416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
XCI64233
LinkDB
All DBs
Position
complement(5732656..5735916)
Genome browser
AA seq
1086 aa
AA seq
DB search
MSTPRYSPAELSRALGLFEPTDEQAAVIAAPPGPLVVIAGAGAGKTETMAARVVWLVANG
YATPGEVLGLTFTRKAAGQLLRRVRSRLARLAGAGLTIPGTDFADDPVTIGTYHAFAGNL
LREFGLMLPVEPDTRLLGETELWQLAFRVVCEHPDALDTDKSPASITAMVLRLAGQLSEH
LVDTAQLRDTHVELDRLVHHLPAGRYQRDKGPSQWLLRMLGTQTERTMLVPLIDALHRRM
REERVMDFGMQMASAARLASTHPEVGEQLRQRYRVVLLDEYQDTGHAQRVALSSLFGGGA
DDGLALTAVGDPIQSIYGWRGASATNLPRFTTDFPLSDGTPAPTLELRTSWRNPPEVLHL
ANEVSLDARHRSVAVRALQPRPGAEPGTVRAALLPDVEAERDWVADRLAAQWHGEVSASG
APPTAAVLVRRNADAAPMADALTRRGVPVEVVGLAGLLAVPEVADVVAMLRLCADPTAGA
AAVRVLTGPRWRLGARDVAALWRRAVTLVGGAPKPDSVAATDEIVAQLDPDADGACLADA
ICDPGPADAYSAAGHARIVALARELTMLRAHLDSPLPDLVAEVRRTLGIDAEVRAAQPVS
AGWSGTEHLDAFGDVVADFASRGHPTVSGLLAYLDTAEEVENGLAPAEVAVSSERVQILT
VHAAKGLEWQIVAVPHLSGRVFPSTASPRTWLTDAADLPPLLRGDCATVSDHGVPVLDTS
DVSDRKGLSDKINDHKRNLEQRRTDEERRLLYVAITRAEHMLLVSGHHWGATESKPRGPS
TFLTELKDVIDRSIEVGQPCGAVDVWADAPADGSPNPLRDRVVEAVWPVDPAGTRRSDVD
RGATLVTMTAKSDPQGLPDVHGWAADVDALLAERESAARPPVPVLPAQLSVSAMVELGRD
PEAVAQRLQRRLPRRPDSQALLGTAFHEWVQRYFQAEKLFDLDDLPGAVDADRQDRGELE
ELQAAFAVSPWAARTPVDVEVPFDMMLAGRVVRGRIDAVFADDDGAVTIVDWKTGEMPSD
PEELQRNALQLAVYRLAWARLHGCPPSAVRAAFHYVRCGRTLMPGTLPDEDELVALLTEA
GEEEVG
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaccgcgctacagcccggccgaactgtccagggcattgggacttttcgagccg
actgacgagcaggccgccgtgatcgccgcgccgcccgggcccctcgtcgtcatcgccggt
gccggggcgggcaagaccgagacgatggccgcgcgggtggtgtggctggtcgccaacggg
tacgcgacacccggcgaggtgctggggctgacgttcacccgcaaggccgccggacagttg
ctccgccgcgtgcggtcccggctggcgcggctggccggggccggcctgacgatcccgggt
acggactttgccgacgacccggtcaccatcggcacctaccacgcgttcgccgggaacctg
ctgcgcgagttcgggctgatgttgccagtggaacccgacacccggctgctcggcgaaacc
gaactgtggcagttggcgttccgcgtggtctgcgagcatccggatgcccttgacaccgac
aagtcgccggcgtcgatcaccgcgatggtgctgcggttggccggccagctctccgaacac
ctcgtcgacaccgcgcaactacgcgacacccacgtcgagctggaccggctcgtgcaccat
ctgcccgcgggccgatatcagcgcgacaagggtccgagccagtggttgctgcggatgctg
ggcacccagaccgaacgcaccatgctggtgccgctgatcgacgcgctgcaccgccggatg
cgtgaggagcgcgtgatggacttcgggatgcagatggcctcggccgcccggctggcctcc
acccatccggaggtgggcgagcaactgcgccaacgctatcgggtggtgctgctcgacgaa
taccaggacaccgggcacgcgcagcgggtcgcgctgtcgtcgctgttcggtggcggcgcc
gacgacggtctggccctgaccgctgtgggcgacccgatccagtccatttacggttggcgg
ggtgcgtcggcgaccaatctgccgcgcttcaccacggactttccgctttccgacggcacc
ccggcgccgacgctggagctgcgtaccagctggcgcaatccgccggaggtgttgcacctg
gccaacgaggtgtccctggatgcgcgccaccggtcggtggcggtgcgggcgttgcagccc
cggcccggcgccgagcccggcacggtgcgcgcggcgctgctgcccgacgtcgaggccgaa
cgcgactgggtggctgaccggctcgccgcgcagtggcacggggaggtctcggcgtcgggc
gccccaccgacggcggcagtgctggtgcgccgcaacgccgatgccgcaccgatggccgat
gcgctgacccggcgcggggtgccggtcgaggtggtcgggctggccgggttgctcgcggtg
cccgaggtcgccgacgtggtggcgatgctgcggctgtgcgccgacccgaccgccggtgcc
gcggcggtgcgggtgctgaccgggccgcggtggcgcctcggggcgcgcgacgtcgcggcg
ctgtggcggcgcgcggtgacgctcgtcggcggcgcaccgaagccggactcggtggcggcg
accgacgagatcgtcgcgcagctcgaccccgacgccgacggcgcatgcctggccgatgcg
atctgcgacccaggtcccgccgacgcgtactccgcggccggtcacgcccgcatcgtcgcg
ctggcccgtgagctgaccatgctgcgggcacacctcgacagcccgcttcccgatctggtg
gccgaggtgcgtcgtaccctcggcatcgacgccgaagtccgtgccgcgcaaccggtctcg
gcgggctggtcgggaaccgaacatctcgacgcattcggtgacgtggtcgccgacttcgcg
tcgcggggacatccgacggtctcagggctgctggcctacctggacaccgcggaggaggtg
gagaacggactggccccggcagaggtggcggtgtcgtccgagcgggtgcagatcttgacc
gtgcacgccgccaaaggcctggaatggcagatcgtcgcggtgccgcatctgtccgggcgg
gtgttcccgtcgaccgcgtcgccgcgcacctggctcaccgacgccgccgatctaccgccg
ctgctgcgcggggactgcgcgacggtgtccgaccacggtgtcccggtgctcgacacctct
gatgtcagtgatcggaaagggttgtcggacaagatcaacgaccacaagcgcaacctggag
cagcgtcgcaccgacgaggagcgtcggctgttgtacgtggcgatcacccgggccgagcac
atgctgctggtgtcgggccatcactggggcgccaccgaatccaagccgcgggggccgtcg
acgttcctgaccgaactcaaggacgtcatcgaccgctcgatcgaggtgggacagccgtgc
ggcgccgtcgacgtgtgggccgacgctcccgccgacggctccccgaacccgctgcgggac
cgtgtcgtcgaagccgtgtggccggtcgacccggcaggcacccgccggagcgacgtcgac
cgcggggcgaccctggtgaccatgacggccaagagtgatccgcagggtctgcccgatgtg
cacggctgggccgccgatgtggacgccctgctggccgaacgggaatcggctgcgcgcccg
ccggtcccggtgctgcccgcgcagctgtcggtcagcgcgatggtcgaactgggccgcgac
ccggaggcggtggcgcagcggctgcaacggcggcttccgcgccgccccgattcgcaggcg
ctgctgggtacggcgtttcacgaatgggtgcagcgatatttccaggccgagaagctgttc
gacctcgatgatctgcccggtgccgtcgacgcggaccggcaggaccgcggagagctggag
gagctgcaggcggcgttcgcggtgtcgccgtgggcggcgcgtaccccggtggatgtggag
gtgccgttcgacatgatgctcgcaggccgggtggtgcgcggccgcatcgacgcggtgttc
gccgacgacgacggtgccgtcacgattgtggactggaagaccggcgagatgccgtcggac
ccagaagagttgcagcgcaacgctcttcagttggcggtgtaccggctggcgtgggcgcgg
ctgcacggctgcccgccgtcggcggtacgggccgcgttccactatgtgcggtgcggtcgc
acgctgatgcccggcacactgcccgacgaggacgaactggtcgcgctgttgaccgaggcc
ggcgaggaggaggtcggctga
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