Methyloradius palustris: ZMTM_03390
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Entry
ZMTM_03390 CDS
T07445
Symbol
uvrD
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mpau
Methyloradius palustris
Pathway
mpau03420
Nucleotide excision repair
mpau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mpau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ZMTM_03390 (uvrD)
03430 Mismatch repair
ZMTM_03390 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpau03400
]
ZMTM_03390 (uvrD)
Enzymes [BR:
mpau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ZMTM_03390 (uvrD)
DNA repair and recombination proteins [BR:
mpau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ZMTM_03390 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
ZMTM_03390 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
Viral_helicase1
AAA_30
AAA_22
OmdA
Motif
Other DBs
NCBI-ProteinID:
BCM24080
UniProt:
A0A8D5FYI4
LinkDB
All DBs
Position
complement(333701..335911)
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AA seq
736 aa
AA seq
DB search
MTDQTTAPHTYATSSDSLLAGLNNKQLEAVTLPNQSALILAGAGSGKTRVLTTRIAWLIQ
TGQISPNGLLAVTFTNKAAKEMLTRLTTMLPINTRGMWVGTFHGLCNRLLRAHHREALLP
ATFQILDTADQLSAIKRVMKLMNVDDEKFPPKQVQGYINSCKDEGMRAHSVDAYDPHSQK
LREIFEEYDKQCQREGVADFAELLLRCYELLERDANIRQHYQNRFKYVLVDEFQDTNRLQ
YQWLKLLAGHAQGNQRNCIFAVGDDDQSIYAFRGARVGNMRDFEQDFAIENIVKLEQNYR
SHSNILDAANAIITHNRNRLGKNLWTSAGAGEPVRVYQAYNDIDEANFIVEEIQSLHRDG
VDLSDIAMLYRSNAQSRVIEHALFSVGLPYRVYGGLRFFERAEIKHALAYMRLMANPNDD
TALLRVINFPTRGIGARSLEQLQEVARQNDTSLWEAALLNTGKIGSFVTLIKQMQEESIG
ISLPEVAELATTLSGLKTFYQGEKEGEDRIANLEELVSAATAFMNQDLGLRIEQSDVDEN
GEIVQSLLTQFLGHASLEAGEHQADVGRDALQLMTVHAAKGLEFKAVFISGLEEGLCPHE
QSLYEANGLEEERRLMYVAVTRARERLYLSHAQSRMLHGQVRYGIPSRFLDEIPEELLKR
LNAKPVAKPFFQTASSSSEQKSAMPWKIGQQVGHGKFGQGVVVSYEGNADDLRIQINFGK
EGMKWLALEYAKLEAL
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atgacagatcaaaccactgcaccccacacatacgcaaccagtagcgactctctacttgct
ggcctaaacaacaaacaacttgaagcagttacgctgccaaaccaatccgcactgatcttg
gcaggggctggtagtggcaaaacacgtgtactaacaacacgtattgcgtggttgatccag
actggacagatttcaccaaacggtttgctagcggtaacttttaccaataaagccgctaaa
gaaatgttgacgcgactaacgaccatgttgccgatcaatacccgcggtatgtgggtgggc
acttttcatggcttgtgcaatcgtttattgcgtgcacatcatcgcgaagccttattgcca
gccactttccagattctggataccgcggatcaactctctgccatcaagcgcgtgatgaaa
ttgatgaacgtggatgatgagaaatttccacccaagcaggtgcaaggctacatcaatagc
tgcaaggatgaaggcatgcgcgcgcatagcgtggatgcctacgacccacactcgcaaaag
ctacgtgaaatctttgaagaatacgataagcaatgccaacgcgaaggtgtagctgatttt
gccgagctgcttttgcgctgttatgaactgctggaacgtgacgccaatatccgccagcat
taccagaaccgctttaaatacgtgttggtggatgagtttcaagataccaatcgtttgcaa
taccagtggctcaaactacttgctggtcacgcacaaggtaatcagcgtaactgcatattt
gcggtgggcgatgatgaccaatccatctatgcattccgtggtgcgcgcgttggcaatatg
cgcgactttgagcaggatttcgcgattgagaatatcgtaaaactggagcagaactaccgt
tctcacagcaatattctcgatgccgccaatgccatcatcacgcacaaccgtaatcgcttg
ggcaagaacttatggacgtccgctggcgctggcgaacccgtgcgcgtgtatcaagcttat
aacgacattgatgaagcaaatttcatcgtggaagaaatccagtctctgcatcgcgatggt
gttgatttaagcgacattgccatgctctaccgctcgaacgcgcaatcgcgcgtcattgaa
catgcgcttttctcagtcgggttaccttaccgtgtatatggtggcttacgcttttttgag
cgcgccgaaatcaaacacgcactggcttatatgcgcttgatggccaatccaaatgacgat
actgcgctactacgtgtcattaactttcccacacgtggcataggcgcacgcagcctagaa
caactgcaagaagttgcccgtcagaatgacaccagcttgtgggaagcggccttgctcaac
acagggaaaattggcagctttgtcaccctcatcaagcaaatgcaggaagaatctattggc
attagcttgccagaagtggctgaactagccaccaccttatcgggcttgaaaactttttat
caaggtgaaaaagagggcgaggaccgtatcgcaaacttggaagaactcgtctccgctgct
actgcattcatgaatcaagaccttggcctgcgcattgagcaaagtgatgtcgatgaaaat
ggcgaaattgtacaatcgttactcacccagtttttaggccacgcaagccttgaggcaggc
gaacaccaggcagatgtcgggcgtgatgcactgcaactcatgacggtgcatgccgccaaa
ggccttgagttcaaagcagtatttatcagcgggctagaagaaggcttgtgcccgcacgag
caaagtttgtatgaggcgaatgggttggaagaagagcgccggctgatgtatgtggcagtc
acgcgtgcacgtgaaagactgtatttgagccatgcgcaaagccgtatgttgcatggccaa
gtacgctatggcattccttcacgctttcttgatgaaatccctgaagaactattaaaacgc
ctgaacgcgaaacctgtagcaaaaccattcttccagactgccagcagcagtagcgaacaa
aaaagcgccatgccttggaagatcggccagcaagtcggccatggcaagtttgggcaaggc
gtggtggtgagctatgaaggcaatgccgatgatttgcgcatacaaatcaatttcggcaaa
gagggcatgaaatggctggcgctggaatatgcgaagcttgaagcgctctaa
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