Methyloradius palustris: ZMTM_10070
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Entry
ZMTM_10070 CDS
T07445
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mpau
Methyloradius palustris
Pathway
mpau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ZMTM_10070 (rhlE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpau03019
]
ZMTM_10070 (rhlE_1)
Enzymes [BR:
mpau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ZMTM_10070 (rhlE_1)
Messenger RNA biogenesis [BR:
mpau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ZMTM_10070 (rhlE_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
UTP25_NTPase-like
P-loop_SecA
DUF8086
HI1480
ERCC3_RAD25_C
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCM24748
UniProt:
A0A8D5K0H3
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All DBs
Position
complement(1065514..1067160)
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AA seq
548 aa
AA seq
DB search
MLSRFVEFAYSWSITLSTEQTTTPNFNELGLSEPILRAISDAGYTTPTPIQAKAIPQVLS
GGDLLAGAQTGTGKTAGFTLPILQLLSTKPIAPSKGRPRCLMLTPTRELAAQIEESVKTY
GKHLPLKSMVVFGGVSINPQINRLSRHLDILVATPGRLLDLAEQKSVDLSGVEILVLDEA
DRMLDMGFIRDIKKILAMLPKQRQNLLFSATFSDEIKTLADGLLHNPGFVEVARRNTASE
MVEQTVHMVNQSHKRELMSYLIKHHDWKQVLIFTRTKHGANRLTEKLVKDGIEAAAIHGN
KSQGARTKALAQFKDGSMRVLVATDIAARGLDIDQLPQVVNFELPNIPEDYVHRIGRTGR
AGASGAAISLVDNEEAKYLKDIEKLIKREIPRVSVEGFVMPTTIEPEAPRPPRQPHGRPP
RNSQRTNNGQQPNGRDGQQRQGQPRNSQSNPRNPQGQAAQGRAPTQGQRAPAQANRDNSG
REHGNRGQANGNKPDQNQHLSEAARHQSMPQTGLFTPPQPNRNNGRPSNRPSNRPASNPS
SRPNNRTR
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
ttgctcagtaggtttgtcgagtttgcctatagctggagtattaccttgtctacagaacaa
acaactacccctaactttaacgagttaggtttatccgaacccattttgcgcgccattagc
gacgcgggttacaccacccctacccccattcaagccaaagccattccgcaagtattaagc
ggtggtgatttgctggctggtgcgcaaactggcactggcaaaacggctggctttacctta
cctattttgcaattgctgagcactaaaccaattgcgcctagcaaaggccgcccacgctgc
ctgatgctcacaccaacgcgagagcttgcagcacagatcgaagaatctgttaaaacctat
ggcaaacacctgccattaaaatcgatggtggtttttggcggtgtgagcatcaacccgcaa
atcaatcgcctgagccgtcatttggacattctggtagcaacaccaggccgtctgctggat
ttggctgaacaaaaatccgttgatctttcaggcgtagaaatcctggtgctagacgaagct
gaccgcatgctggacatgggctttatccgcgacatcaagaagatattggctatgttacct
aagcaacgccagaacctgctgttctccgctacgttctctgacgagatcaagacactggcc
gatggcctgctacataacccaggctttgtagaagtggcgcgccgcaataccgcctcagag
atggttgagcaaaccgtgcacatggtgaatcagagccataagcgcgagctgatgagctac
ctgatcaagcaccatgactggaagcaagtactgatattcacccgtacgaagcatggcgcg
aatcgcctgactgagaagttggtaaaagatggtattgaagccgctgcgatccacggcaat
aagagccaaggcgcacgtactaaagctctagcccagtttaaggatggcagcatgcgtgta
ctggtagcgactgatattgctgcacgtggccttgatattgaccagttgccacaagtggtg
aatttcgagctgccaaacatccctgaagattacgtccaccgtattggccgtacaggccgt
gcaggtgctagtggtgccgctatttcattggtagataatgaagaagcgaaatacctgaaa
gacattgagaagctgatcaagcgtgagattccacgcgtttcagtagaaggctttgtgatg
ccaactactatagaacctgaagcaccgcgccctccacgccagccacacggcaggccacca
cgtaattcacaaagaaccaacaacggccagcagccgaatggcagagatgggcagcagcgc
caaggtcagcctagaaactctcagagcaaccctagaaaccctcaagggcaagctgcgcaa
ggccgagcaccaacccaaggccagagagcgccagcacaagcgaatagggataactctggt
agagagcatggcaatagaggccaagcaaacggtaacaagccagatcagaaccagcatctg
tcagaagctgcacgccatcaatcaatgccgcagactgggttatttaccccgccacagcca
aaccgtaacaatggccgccctagtaatcgtcccagcaatcgacccgccagcaatccctct
agccgacctaataatcgcacgcgataa
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