Methyloradius palustris: ZMTM_15640
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Entry
ZMTM_15640 CDS
T07445
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mpau
Methyloradius palustris
Pathway
mpau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ZMTM_15640 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpau03019
]
ZMTM_15640 (rhlE_2)
Enzymes [BR:
mpau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ZMTM_15640 (rhlE_2)
Messenger RNA biogenesis [BR:
mpau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ZMTM_15640 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Utp25_C
ERCC3_RAD25_C
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BCM25305
UniProt:
A0A8D5G3X2
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All DBs
Position
1689128..1690573
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AA seq
481 aa
AA seq
DB search
MTDSVNQAVNAEPVNVELVTEIHFSDLGLAPELLKALTESGYTKPTPIQAQAIPIALEGG
DLMAGAQTGTGKTAAFALPLLQKLLPLASSSASPARHPVRALILAPTRELAIQVEESVKA
YAKHTPLRSLVVFGGVDIKTQTPSLMRGVEVLVATPGRLLDHIEQRTVQLGQVQMLVLDE
ADRMLDMGFMPDLKRILAMLPKQRQTLMFSATFSKEIKKLSEEFLNNPKLIEVARSNATS
ENVTQKVYLVAQTHKHALLTKILKGSDASQVIVFTKTKLTASRLAKQLQREGISADAIHG
DKSQLERMQALEAFKQGTIAILIATDVAARGLDIDHLPMVINYEIPSAPEDYVHRIGRTG
RAGKSGIAISLVAPEEEKYLKEIEKLIKRQITPEQTFVPETSATSQSSSRESVTDNRSSR
GSNETRASSPRPAPKKKSTDEWFDKPYEPSSSANNAQQLNRVGSKPKTEVAALLGGLQRR
N
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgacagactcagtgaatcaagcagtgaatgccgaaccagtgaatgttgaactggtgact
gaaatccacttttcagatttaggcctcgcgcctgaactgctgaaagccctcactgagtct
ggttataccaaacccactccaattcaagcgcaagcaattccgattgcgcttgaaggcgga
gacctcatggctggcgcacaaacaggtacaggtaaaactgctgcttttgcgttgccactc
ttacaaaaactgttgccgcttgctagcagcagtgcatcacctgcccgccaccctgtgcgc
gccttgattcttgcgcctacgcgcgaattggcgatccaggttgaagaaagtgtcaaagcc
tacgcaaaacatacgcccttgcgttcattggtagtatttggcggcgttgatatcaaaacg
caaacaccaagcctgatgcgcggtgttgaagtgttagtcgcgacccctggccgcctgctc
gaccatattgagcaacgtacggtgcaacttggtcaagtacagatgctggtgctcgatgag
gcagaccgcatgctggacatgggctttatgcctgacctaaagcgtattttggcaatgctg
ccaaaacagcgtcagacactgatgttttcggcaaccttctctaaagaaatcaaaaaactc
tcagaagagtttttaaataatcccaaactcattgaagtggcgcgtagtaatgccacttct
gaaaatgtgactcaaaaagtatatctggtcgcacaaacacataagcacgccctgctaaca
aaaattttaaagggtagcgatgcttcacaagtcatcgtattcaccaaaaccaaactgact
gccagccgtttagccaagcaattacaacgtgaaggcatctcagcagatgcgattcatggc
gataaaagccagctcgaacgcatgcaagcgctagaagctttcaagcaaggcaccattgcc
atactgattgcgaccgatgtcgctgcacgtggcctggatattgatcacctgcctatggtg
attaactatgaaatccctagcgcaccagaagattacgtacaccgcataggccgcacaggc
cgtgctggcaagtctggtattgcgatttcactggtagcgccagaagaagaaaagtacctc
aaagaaatcgaaaaactgatcaagcgccaaattacgcctgagcaaacgtttgtgcctgaa
acgtctgcaactagccaatcaagctcaagagagagtgttactgataatagaagcagccgc
ggcagcaatgaaactcgcgctagttcaccacgcccagctcctaaaaagaaaagcactgat
gaatggttcgacaagccttacgaaccttcaagtagcgcaaataatgcacaacagctcaat
cgtgttggcagcaaaccaaaaaccgaggttgctgccttattaggtggcttacagcgcaga
aactag
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