Methyloradius palustris: ZMTM_15950
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Entry
ZMTM_15950 CDS
T07445
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mpau
Methyloradius palustris
Brite
KEGG Orthology (KO) [BR:
mpau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpau03019
]
ZMTM_15950
Enzymes [BR:
mpau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ZMTM_15950
Messenger RNA biogenesis [BR:
mpau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ZMTM_15950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
AAA_23
FtsK_SpoIIIE
AAA_25
Fez1
SLFN-g3_helicase
ABC_tran
PhoH
Motif
Other DBs
NCBI-ProteinID:
BCM25336
UniProt:
A0A8D5GBQ5
LinkDB
All DBs
Position
complement(1731579..1735544)
Genome browser
AA seq
1321 aa
AA seq
DB search
MLVDRFSLRRKLQQTRASLEQGKPVDRLITEISNKLRESVARLEARKLALPKPDFPSELP
VSGRKEDIAAAIAKHQVVIVCGETGSGKTTQLPKICLELGRGVSGLIGHTQPRRIAARSV
ASRIAQELKSPLGEVVGYKVRFNDKLSASSYIKLMTDGILLAETQGDRFLNAYDTIIIDE
AHERSLNIDFLLGYLKQLLPKRPDLKVIVTSATIDADRFSRHFDGAPVIEVSGRTYPVEI
RYRPLGKAGFKAQSKEDEVADEDNILLLNEDLMGVQRKGKTESGWRAAKDWIAEDDREEA
IEEAILDTVDDLSRLGGGDVLVFLPGEREIRDTADHLRKHLKHAEILPLFARLSIEDQQK
VFRPSGGRRVVLATNVAETSLTVPGIKYVVDAGLARVNRYSSRAKVEQLQIEKISQAAAR
QRAGRCGRVSDGICVRLYDEQDFNNRPEFTEPEILRSSLAAVILRMAALKLGDVNEFPFI
EAPSSRLITDGYQLLQELGAVDSNRQITEVGNQLAKLPLDPRVGRMILAAKKESCLQEIL
IIASALSIQDPRERPMDKREAADQAHAKFADERSDFMGYLKLWAFYDEALKNKKSNKELL
NKCHQNFLSFLRLKEWRELHSQIVSIVTEMDFKLNDLDASYDQIHRALVSGLLGNIGFKD
GESDSYQGARGIRFNIAPGSALKKTRPKWVMAAELMDTTKLYARCVAKIEPDWIEPVARG
LTQSHYSDPRWDRKLAQVAAWERVSLYGLTIIPKRRVHYGPIDPKESREIFIREALANME
FDTRAPFFEANRKLISEIEELEHKARRQDVLVDEHTLFAFYDEIIPEGIINGAGFEAWRE
TVEKTNPKLLYLTRELLMRHGAAGVTEAQFPESFVMDGVSLPLKYRFEPSHPLDGVTATV
PLALLNQLDSTRAEWLVPGMLREKLTTLVKALPKTYRRVCVPVPEFVTGFLEQTKVGESP
ILQALAIYIKQRPKLEISPSDWPQDALPAHLLMNFRIVDEKARELGMGRDWNALKQQLGQ
AAQLTFRSASPEIEKSGLKQWDFGDLPATLSFNRDGRSLTGYPALEDRGDSVSIKLFDTE
SAAIKAHRLGVCRLMRFELKEQIKQLEKGLPGFNQYALLLRNIVSPDELREDMLTAIADR
AFIGEDSLPRSNAEFMNLKQRARTRLPAVAEAASRLAQAISAEYQPLTQKLASLPAPMAR
VKAEVEMQLSKLLPKRFFSQTPWDSLQHLPRYMKCLKLRLDKYPASIERDTRSAQSVQQV
WQRWEEKVIALRKAGQDVSPELDNYRWLIEELRVSLFAQELKTPFPVSAKRLDKLWFDLK
P
NT seq
3966 nt
NT seq
+upstream
nt +downstream
nt
atgctggtggatcgtttttcattgcgccgcaaattacagcaaacacgcgccagcctcgag
caaggaaagcctgtagatcgcttaatcaccgagatttctaacaagctgcgcgagtctgtt
gctcgattagaagcccgtaaactggcgttgcccaagcctgactttcctagcgaactgccc
gtaagtggtaggaaagaagacatcgccgccgctattgcaaagcatcaagtggtaattgtt
tgtggtgagactggttctggtaaaactacgcaactgcccaaaatctgcttggagttaggc
cgcggtgtgagtggtttgattggtcacacgcagccgcgccgaatcgctgcgcgatctgtg
gcatcacgtattgcgcaggagttgaagtctccgctcggcgaagtggtcggttataaagtt
cgcttcaacgacaagctttcagcatccagctacatcaagctgatgacggacggtattttg
ctggctgaaacgcaaggcgatcgattcctcaatgcctatgacaccatcatcatcgatgaa
gcccatgaacgcagtctgaatatcgatttcctgctgggatatctcaagcaattattaccc
aaacgcccagatttaaaagtcattgtcaccagcgccacgattgatgctgatcgtttctct
cgccactttgatggtgcgcccgtgattgaagtttcaggccgcacgtacccggtagagata
cgctatcgcccactaggcaaggctggcttcaaggcacaaagcaaagaagatgaagtggcg
gatgaagacaatattctgctactgaatgaagacttgatgggcgtgcagcgcaaaggtaaa
accgaatcgggctggcgcgcagccaaggattggatagcagaggatgaccgcgaagaggcg
atcgaagaagcgattctggatactgtagatgatctatcgcgtttaggtgggggcgatgtg
ctggtatttttacccggtgagcgcgagattcgcgatacggcagaccatctgcgtaaacac
ctcaagcacgccgagatattgcctttattcgcgcgtctttcgatagaagaccagcagaag
gtattcaggccgtctggcggtcgccgtgttgtgttggctaccaatgtggctgaaacttcg
cttaccgtgcctggcattaaatacgtggtggatgctgggcttgcgcgggtgaatcgctac
agttcccgcgccaaggtcgagcaattgcagatcgagaaaatctcgcaggccgccgcaagg
cagcgtgcaggccgttgtggccgtgtctcagatggtatttgtgtgcgactttacgatgag
caggattttaataatcgccctgagtttaccgagccagagattttgcgttcctcgctggct
gccgtcattctgcgcatggccgcgcttaagcttggtgatgtgaatgagtttccatttatc
gaggcgccaagttctagactcatcaccgatggctaccagttattgcaggagctaggcgca
gtcgatagcaatcgccagatcactgaagtgggcaaccagcttgccaagttaccgctagac
ccgcgagttgggcgcatgatattggcggcaaaaaaagaaagttgtctgcaagagatactg
attatcgccagtgctttgtctattcaagacccgcgtgaaagaccaatggataagcgcgaa
gctgctgaccaggcgcatgcgaaatttgctgacgagcgctctgacttcatgggctatctg
aagctctgggctttctacgacgaagccttgaagaacaaaaaatcgaacaaagagctgctc
aataaatgccaccagaatttcctctctttccttcggttgaaagagtggcgtgaactgcat
agccagattgtgagtatcgtcacagagatggactttaagctcaatgatttggacgcaagc
tacgaccagattcaccgtgcgctggtgtcgggtctgcttggcaatattggctttaaggat
ggcgaatccgatagttaccaaggtgcgcgcggcatccgttttaatattgcgccaggttca
gcactcaagaaaactcgccccaaatgggtgatggcggctgagttgatggacaccaccaag
ctctatgcgcgctgtgtcgccaagatagagccagactggattgagccagtcgcgcgcggt
ttaacgcaaagccattacagtgatccacgctgggatagaaagctcgcgcaagtggcggct
tgggagcgcgtcagcctttacggtttgactatcatccccaagcgccgtgtgcattatggg
ccgattgaccccaaggaatcgcgcgaaatttttattcgtgaagctttggcgaatatggag
ttcgatacccgcgcgccgttctttgaggctaaccgaaaattgatctctgagattgaagag
cttgaacacaaggcacgacggcaggatgtattggtggatgagcatactttgttcgcattt
tatgatgagatcatccccgaaggcattatcaacggcgctggttttgaagcgtggcgcgag
actgtggaaaagactaatcccaagttgttgtatctcacgcgcgagctactcatgcgacat
ggtgcagccggcgttaccgaagcgcaattccctgaaagctttgtcatggatggcgtttca
ctgccgcttaaatatcgctttgagcccagccatccgctggatggtgtaacagcaacagtg
ccgctcgcgctacttaatcagctagattcaacccgtgctgaatggctggttccgggtatg
ttgcgcgaaaagctgaccacattggtgaaagcgttgcccaaaacctacaggcgtgtttgc
gtccccgtacctgagtttgtgactggttttctggaacagaccaaagtcggcgaaagccca
atattgcaagctttggcaatctacattaaacagcgcccaaaacttgaaatctcgcccagc
gactggccacaagatgcattgccagcccatctgttgatgaatttccgtatcgtcgatgaa
aaagcacgagaactggggatggggcgagactggaatgcgctcaagcagcaactcggtcag
gccgcgcaactgactttcagaagcgcttcacctgagatcgagaagtctggcctcaaacaa
tgggatttcggcgatttgcctgctacgctgtcgttcaatcgcgatggccgttcactcacg
ggctaccccgcgctggaagatcgtggcgatagcgtttccatcaagctgttcgacaccgaa
tcagccgccatcaaagcccacaggctgggcgtttgccgattgatgcgatttgagcttaaa
gaacaaatcaagcagctggaaaaaggcctgcccggattcaatcaatacgccttgctgctg
cgcaatattgtgagcccagacgagctgcgagaagacatgctcaccgcgattgccgaccgt
gcttttattggtgaagatagcttgccgcgcagcaatgccgagttcatgaatctcaaacag
cgcgccagaacccgcctgccagcagtcgccgaagcggcttcaaggttggcgcaagcgatt
agcgccgaataccaaccactcacacaaaaactcgccagcctgccagcacccatggcgcgg
gttaaagccgaagtcgagatgcagctatccaaactattacccaaacgtttcttcagccaa
accccttgggatagtttgcaacacctgccacgctatatgaaatgcctaaaattgcggttg
gataaatatccggccagcatagagcgcgatacccgtagcgcgcagtcagtgcaacaagtc
tggcagcgctgggaagagaaagtgattgcgctgcgcaaagcgggacaagacgttagccct
gagctggataactatcgctggttaatagaagagttgcgagtatccctgtttgcacaggag
cttaagacaccattcccagtatcggccaagcgcttggacaaactctggtttgaccttaaa
ccctga
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