Methyloradius palustris: ZMTM_17820
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Entry
ZMTM_17820 CDS
T07445
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mpau
Methyloradius palustris
Pathway
mpau03410
Base excision repair
mpau03430
Mismatch repair
mpau03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mpau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ZMTM_17820 (recJ)
03430 Mismatch repair
ZMTM_17820 (recJ)
03440 Homologous recombination
ZMTM_17820 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpau03400
]
ZMTM_17820 (recJ)
DNA repair and recombination proteins [BR:
mpau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ZMTM_17820 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ZMTM_17820 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ZMTM_17820 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
HEM4
GFO_IDH_MocA
Motif
Other DBs
NCBI-ProteinID:
BCM25523
UniProt:
A0A8D5G3W3
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All DBs
Position
complement(1913751..1915445)
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AA seq
564 aa
AA seq
DB search
MVKVVERSYEPEFQANLVASGIHPALARVLAARGIAQASQLESSLTGLIAPEKLTNAVEV
AKLLADAIAQNKSLLVIGDYDADGATATAVAMRGLRSMGAKVDFLVPNRFEYGYGLTPEI
VALAATRKPDIIITVDNGIASVEGVDAANKLGIAVLVTDHHLPADTKPDAACIVNPNQHG
CDFPSKNLAGVGVIFYVMLALRAELRTRGAYVDKPEPNLTELLDIVALGTVADLVKLDEN
NRILVDQGLRRIRAAKGCPAIRALLKVAGRNPALVTAQDLGFSVGPRLNAAGRLDDMSIG
IHCLLTDNEDEAQQMAQKLHEMNATRRDIQSDMQDAAMIALDDIDASERFTISLYDTNWH
QGVIGILASRIKELHHRPVVAFANAGDGILKGSARSIAGLHLRDALDLLSKKQPDLLLRF
GGHAMAAGLSIREADFNVFNSSFEAVVAGLLTPADLESVVEVDGALDAIDMGWDMAAAIE
RQVWGQGFPQPMFQDEFKVLEQRIVGEKHLKLTLGKNRQRFDAIFFQQQDFLPENISAVY
QLQTNQYNGKQSVQLALKHWQPAI
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggtaaaagttgttgaacggagctacgagcctgagtttcaagccaatcttgtcgccagc
ggtatacaccctgcattagcccgcgtattggcggcacgcggcattgcgcaggcttcccag
cttgaatcttcgcttacaggtctgattgcacctgaaaagctgacaaatgcagtagaggtg
gccaagttactggccgatgcaattgcccaaaataaatcactactagtgattggcgattac
gatgccgatggcgcaaccgcgactgcagtagcgatgcgtggcctgcgcagcatgggcgct
aaggttgattttttagtgcccaaccgctttgaatatggctatggtttaacgccagaaatt
gtcgcgctcgcagcgactcgcaagcctgacatcattattactgtggataacggtattgcc
agtgttgaaggtgtagacgcagccaacaaactaggcattgccgtgctggtgacggaccac
catttacccgcagataccaagccagatgccgcctgcattgtgaaccctaaccagcatggt
tgtgatttcccaagtaaaaatttagcaggtgtcggcgttattttctacgtaatgctagct
ttgcgcgcagagctccgtaccagaggcgcatatgttgataagcccgaacctaatcttaca
gaactgctggatattgttgctcttggcacagtggctgacttggtcaagctggatgaaaat
aaccgtattctggtcgatcagggtttgcgcagaatacgcgctgctaaaggctgcccagcc
atacgtgcattgctaaaagttgcgggacgaaatccagcattggtaactgcacaagacctg
ggctttagcgtaggtccaaggctgaatgcggctggcaggttggatgatatgtcgataggt
atccattgtctgctcacagataatgaagacgaagcgcaacaaatggcgcaaaaactacac
gagatgaacgccacgcgccgcgatattcagtctgacatgcaagatgccgccatgattgcg
ctggatgatattgatgcaagcgagcgttttactatttcgctttacgataccaactggcat
caaggggtgattggcattctagcctcgcgcatcaaagagctgcatcatcgcccagtcgtt
gcttttgccaatgcaggtgatggcatattgaaaggctcggcccgttctattgcgggcctg
catttgcgcgatgcgctggatttgctctctaaaaaacagcctgacctgctactccgtttt
ggtgggcatgcgatggcggctggtttgagcatacgtgaggctgatttcaatgtattcaac
tcaagttttgaggccgtagttgcaggcctgttaacccctgctgatttagagtctgtggta
gaggtggacggcgcactggatgccattgatatgggttgggatatggccgctgctatagag
cgccaagtctgggggcaaggctttccacagccgatgtttcaagatgaattcaaggtgctt
gaacagcgtattgttggtgaaaagcatttaaagctaactttgggcaaaaatcgccagcgg
tttgatgctattttttttcagcagcaagattttttgcctgagaacattagcgctgtatat
cagttgcaaactaatcaatacaatggaaaacaatcagttcagttggcgctaaaacattgg
cagccagctatctaa
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