Marinomonas posidonica: Mar181_1673
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Entry
Mar181_1673 CDS
T01508
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mpc
Marinomonas posidonica
Pathway
mpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mar181_1673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpc03019
]
Mar181_1673
03009 Ribosome biogenesis [BR:
mpc03009
]
Mar181_1673
Enzymes [BR:
mpc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Mar181_1673
Messenger RNA biogenesis [BR:
mpc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mar181_1673
Ribosome biogenesis [BR:
mpc03009
]
Prokaryotic type
rRNA processing factors
Mar181_1673
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AEF54711
UniProt:
F6CZX1
LinkDB
All DBs
Position
complement(1816156..1819419)
Genome browser
AA seq
1087 aa
AA seq
DB search
MINGCPDTAVAFSYPLTEFTHKMIRMLINATQQEELRVALVDGQRLYDLDIESGSREQKK
SNIYKGKITRVEPSLEAAFVDFGADRHGFLPLKEISKTYFSKKVNHEGRINIKDVISEGQ
EVIVQVDKEERGNKGAALTTFVSLAGRYLVLMPNNPRAGGISRRIDGDDRSQLKEAMSGL
KTPENGGLIVRTAGVGRSTEELQWDLDYLETLWSSITKAAAEKPAPFLIYQESNIVIRAI
RDYLREDIGEVLIDEKQAYQDAVNFVMQVMPHFKSRIKLYTDSTPLFNRFQIETQIETAF
QREVRLPSGGSIVIDPTEALVSIDINSARATKGGDIEETALQTNLEAADEIARQLRLRDI
GGLVVIDFIDMTPVRNQKEVENRMKTALEADRARVQLGRISRFGLLEMSRQRLRPSLGET
SGIVCPRCNGQGFIRDVESLALSVLRLIEEECAKERTAQIRAVLPVSVATFLLNEKRTNI
AKIEKRNSVHIILVPNPHMETPHFEVERIRDDNSVVSQNDTSYTLVETPEQPPYEPRQAN
EVVRQQAAVTSIAPKAPAPAHTNTPVKSKPSKPNKPGLLSRILTALFGESTDSKAAEKGN
KNTTNSKNTRNNSSKNASKNARPNRNKRNVKHQSTEREESQDKARSTRQSRREQAEAGGK
NNNGRRNNRPNRQNEQDNKTDNQEQAPKAARQQKEVPEVKERKRDRNENRRRNGKIKDEA
QESAKLQEAEQAAKLESVEKTESDNQSDQQDKSGDEPQQRRSRRSRRSRRPQREENNTEN
NETEIAQAEPKATETSAEEKEQAIETTSPVNSEAVAAATQALDENNGPVIEADSDRETES
KTTSDAKAEEVVKPKPKMSVKAQISKAEQSSELENAEADISAAVISASTETEALNNESET
VNTATTEAPTQVVTEAVNVEVEATSSTEENVAETVTETDALPTKDVTIEEAAETAAEPKV
VTPEIEMPAAEYAEPTAQQTVASQSEQVSQDSAVPAQTETEQATDKKTRVPRRGRGKPAA
KAASPETTAPVELPEAILAQQEKFRQEQEEKRNAATSRRRTASGRVKNDPRLAREESQPV
EESTESN
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
ttgattaatggttgccctgacactgctgtggcgttttcgtatccgctaacagagttcaca
cataaaatgattagaatgttaataaatgcaactcaacaagaagagttgcgcgttgcacta
gtagacggtcaacgtctgtatgatctagatatcgaatctggctctcgcgagcagaaaaaa
tccaacatttataaaggcaaaattactcgagtcgaaccgagtcttgaagccgcttttgtt
gattttggcgcagaccgccacggattccttcctcttaaagaaatttccaaaacctacttc
tctaaaaaagtgaaccacgaaggtcgcatcaacattaaagatgtgatcagcgagggacaa
gaagtcattgttcaggttgacaaggaagagcgcggcaacaaaggcgcggcgctgaccacc
tttgttagcttggcggggcgctacctggtattaatgccaaataacccacgcgctggtggc
atttctcgacgcattgacggcgacgatcgttcacagttaaaagaagcaatgtcaggtcta
aaaacacctgaaaatggcggcttgattgttcgtacggcaggcgttggacgctcgactgaa
gagcttcagtgggatttagactacctagaaacgctttggagctccatcactaaagcggct
gctgaaaaacctgcgcctttcttaatctatcaagaaagtaacattgttattcgagccatt
cgcgattaccttcgtgaagacatcggcgaagtactgatcgacgaaaaacaagcttatcaa
gatgccgttaactttgtgatgcaggtaatgcctcactttaagtctcgcattaagctttac
acagactcaacaccactatttaatcgctttcagattgaaactcagattgaaacagccttc
caacgcgaagtgcgcttaccttctggcggctctatcgttattgatccaacagaagccttg
gtgtccattgacatcaactcagcacgtgcaacgaaaggcggcgacatcgaagagaccgca
ctacaaaccaaccttgaagccgcagatgaaattgctcgtcagctaagacttcgtgatatt
ggtggactagtggtcattgactttatcgacatgacgcctgtacgcaaccagaaagaagta
gagaatcgcatgaaaacggcgcttgaagctgaccgtgctcgtgttcaactgggtcgcatt
tctcgctttggccttcttgaaatgtctcgccaacgcctacgcccttcacttggcgaaacc
agcggtatcgtttgtccacgctgtaatggccaaggcttcattcgtgacgttgaatctctt
gccttatccgtattacgtcttattgaagaagaatgtgcgaaagaacgtacagcacaaatt
cgtgcggtactacctgtgtctgtcgcaactttcttgcttaatgaaaagcgtactaacatt
gcgaaaattgaaaaacgcaacagcgtacacattatcctagtgccaaatccgcacatggaa
acaccgcattttgaagttgaacgaattcgtgatgacaattcggttgtgtctcagaatgac
actagctacacattagtcgaaacacctgagcaaccgccatacgaacctcgtcaagccaac
gaagtggttcgccagcaagcggctgtcaccagcattgcaccaaaagcaccggcaccagcg
cacaccaacacgccagtgaaaagcaagccaagcaagccgaataaacctggcctattgtct
cgcattttgaccgccctattcggtgaatcaacagattcaaaagcagccgaaaaaggcaat
aaaaataccacgaacagcaaaaatactcgtaataacagcagcaaaaacgcaagcaaaaac
gctcgaccaaatcgcaacaagcgtaacgtgaaacaccagagcacagagcgtgaagagtca
caagataaagcacgttcaactcgtcaatctcgccgcgaacaagcggaagctggtggcaaa
aacaacaatggtcgtcgcaataatcgtccaaatcgtcaaaacgaacaggacaataaaaca
gacaaccaagaacaggctcctaaggcggcacgccagcaaaaagaagtacctgaggtgaaa
gaacgcaaacgcgaccgcaatgagaatcgccgtcgcaatggcaaaatcaaagatgaagct
caggaaagcgcgaaactgcaagaagcagaacaagctgccaaactagagtctgtagaaaag
actgaatcagacaatcagtctgatcaacaggataagtctggtgatgagcctcagcaacgt
cgctctcgtcgctctcgtcgttctcgccgcccacaacgtgaagagaacaacacagagaat
aatgagactgagattgctcaagctgaacctaaagcaacagaaacatcagcggaagaaaaa
gagcaagctattgaaaccacatcaccagtgaattctgaggctgtcgcagcggcaactcaa
gcacttgatgaaaacaatggcccagtcattgaagccgactcggatagagaaactgaaagc
aaaacaacatcagacgcgaaagcagaagaagtcgttaagcccaagcctaaaatgtccgtt
aaggctcaaatcagcaaagcagaacaaagctcagagctagaaaacgctgaagcggatata
tcggctgcagtgatcagcgcatcaactgagactgaagcacttaacaatgaatcagagact
gttaacacagcgaccactgaagcaccaactcaagtagtaactgaagcggttaatgtcgaa
gttgaagcaaccagctctaccgaagaaaatgtcgctgaaacggtcactgaaacagatgca
ttaccgaccaaagatgtgactatagaagaagcagcagaaacagcggcggaaccgaaagtc
gtaacaccggaaattgaaatgcctgccgctgaatatgccgagccaacagctcaacaaaca
gtcgcaagccaaagcgaacaggttagccaagattcggccgtgcctgctcaaactgaaaca
gagcaagcgacagataagaaaacgcgtgttcctcgacgtggtcgtggcaagccagcagcg
aaagcggcaagcccagaaacaaccgctccggtagaacttccagaagccattctggcccaa
caagagaaattccgccaagaacaggaagagaagcgcaatgctgcgacttcacgccgacgc
actgcctcaggtcgagttaaaaacgatcctagattagctcgcgaagagagccaaccagtg
gaagaaagcactgaatcaaattag
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