Marinomonas posidonica: Mar181_1939
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Entry
Mar181_1939 CDS
T01508
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mpc
Marinomonas posidonica
Pathway
mpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mar181_1939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpc03019
]
Mar181_1939
03009 Ribosome biogenesis [BR:
mpc03009
]
Mar181_1939
Enzymes [BR:
mpc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mar181_1939
Messenger RNA biogenesis [BR:
mpc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mar181_1939
Ribosome biogenesis [BR:
mpc03009
]
Prokaryotic type
rRNA helicases
Mar181_1939
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
AAA_30
AAA_19
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEF54977
UniProt:
F6CSC3
LinkDB
All DBs
Position
complement(2112289..2114139)
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AA seq
616 aa
AA seq
DB search
MSDADIQPTFDSLGLIAPVLKAVADLGYEQPSAIQAQSIPYLLEGHDLLGQAQTGTGKTA
AFALPLLSRIDVTDKTTQLLVLAPTRELAIQVSEAFQSYARNIPDFHVLPIYGGMSYDSQ
LRQLRRGVQVVVGTPGRVMDHIRRKTLKLDTLKALVLDEADEMLRMGFIDDVEWILEQTP
SERQIALFSATMPSVIRQVANRHLNNPKEVKIVTKTSTATTISQKYWQVSGLHKLDALTR
ILEMNEHDGMIIFVRTKAATVELAEKLTARGHACEALNGDISQNLRERTVDRIKKGQIDI
LVATDVVARGLDVERVSHVVNYDIPYDTESYVHRIGRTGRAGRSGTAILFVAHRERRMLQ
AIERATRQPIEKMNLPTASDINEQRVSRFKQRITDTMDNENLDFFLELVQSYQKDNEVDP
LKMAAALAHMAQGKTPLLLSEMEVRQERRERREGRDSRDGREDRAPRERKVRPVTADAMP
LKDDPNTAMTRYVVQVGYSAGVKPGNIVGAIANEASIESRYIGHIEIYEDFATVDLPSNL
ESGALGKLSKMRICGQRTDIAKLENADELNKRAASPSGRRRPGGGEKRGYGDRERRRSSG
GRDRGERRPRAPRKDS
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgctgatattcagcctacatttgattcgttgggcttaattgcccctgttcta
aaagcggttgctgacctaggttacgagcaaccctctgctatccaagcgcaaagtattcca
tatctattagaaggtcacgaccttttggggcaagcgcagacgggtactggtaagacggca
gcatttgcgcttccgctcttgtctcgcattgacgtgacagataaaacgacacaattactt
gtattggctccaactcgtgaacttgctattcaggtatctgaagcatttcaaagttacgct
cgcaatattcctgacttccacgtattgccaatttacggtggtatgtcttatgactcgcaa
ctacgtcaacttcgacgtggcgtgcaagtggttgttggtacaccaggtcgcgtgatggat
catatccgtcgtaagactttgaaattggataccctaaaagcacttgtattagatgaagct
gacgaaatgttacgcatgggcttcattgatgatgttgagtggattctggagcaaacgcct
tcagagcgccaaattgctttgttctcagcgactatgccttcagtgatccgccaagtggct
aatcgccatttgaacaatccaaaagaagtgaaaattgtcactaagacatcaacagcgacc
actatttctcaaaaatactggcaagttagcggcttacacaagctggacgctttgacccgt
attcttgagatgaacgagcatgatggcatgatcatctttgttcgtaccaaagcggccacg
gttgagctggctgaaaagctaaccgctcgtgggcatgcttgtgaggcgctaaacggtgac
attagtcagaacttacgtgagcgtaccgttgatcgtatcaagaaaggtcaaatcgatatt
cttgtggcgaccgacgtagtggcacgtggcttagacgttgaacgcgttagccatgttgtt
aactatgacatcccatacgataccgaatcttatgtccaccgtatcggtcgtacaggtcgt
gctggtcgttctggtacggcaatcttgtttgttgctcatcgtgagcgtcgtatgttgcaa
gccattgagcgtgcgactcgtcagccaattgagaagatgaatttgccaaccgcatctgac
atcaatgagcagcgtgtgagtcgttttaaacagcgcatcactgataccatggataacgag
aatcttgacttcttcttggagcttgtccaaagctatcaaaaagacaatgaagtcgatcct
cttaaaatggctgcggcgttagctcatatggcacaaggtaaaacacctttgttgttgtct
gaaatggaagttcgtcaagagcgtcgtgagcgtcgcgaaggccgtgatagccgtgacggt
cgtgaagacagagcgccacgtgagcgcaaagttcgtcctgtaacggctgacgctatgccg
cttaaggatgatccaaatactgcaatgacacgttacgttgttcaagtaggctacagtgct
ggtgttaagccgggtaacattgtaggagcgattgcgaatgaagcgtctattgaaagtcgt
tacattggtcacatcgaaatctatgaagattttgcgaccgttgatttgccttctaacttg
gagtcaggtgcgttaggtaaattgagcaagatgcgcatttgtggtcagcgtacggacatc
gctaaattagaaaatgctgacgagttgaataaacgcgcagcatcgccatcaggacgtcgt
cgtccgggtggtggcgagaaacgtggttacggtgatcgtgaacgccgtcgttcgagtggc
ggtcgtgaccgtggcgagcgccgtccacgtgctccacgtaaagacagttaa
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