Marinomonas posidonica: Mar181_2558
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Entry
Mar181_2558 CDS
T01508
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mpc
Marinomonas posidonica
Pathway
mpc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Mar181_2558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpc03400
]
Mar181_2558
Enzymes [BR:
mpc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Mar181_2558
DNA repair and recombination proteins [BR:
mpc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Mar181_2558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
DUF4951
His_Phos_1
Motif
Other DBs
NCBI-ProteinID:
AEF55589
UniProt:
F6CXH3
LinkDB
All DBs
Position
complement(2827819..2831511)
Genome browser
AA seq
1230 aa
AA seq
DB search
MSDIDHLQSIPETLDAMSFPLFGKRLIEASAGTGKTYTIANLYLRLLVPTGQPGDLEQPL
TVDQILVVTFTEAATAELKARIRARIRGARKALILQQSDDVFLSQWLSVMTAEQQADAIE
KLLYAEKQMDEAAVFTIHGFCQRMLSQNAFESRMLFQQTIETDEQAPLAMAVKDVWRRVF
YPMSDSKVALIKPIWSTPDALLRDLYLLNNQPDAKILASDYDWEAALQSAQQQIQIVRET
WLEQSQDIIDALEHSGIKRTFWRKDPAKDVSAMQQWATSGHFELDKCLEKFDANEHATRI
SKGGEVPQHSFFGLVAELRQAFPEAGKLKAVLLVSLWQQVKERMTEWKRATQSLTFTDLL
TSLDQALTQDDSGKLAQRIRQLYPIALIDEFQDTDAVQYRIFSEVYQPASTTQASLGLIM
IGDPKQAIYAFRGADIYTYLAAKKQVDAVYSLATNYRSSAAMIQSVNALFTTQDSPFRVS
GIPFVAVQDRGVLGQFQRHGETQAALQFLYQASEESVSPKDYREQMAEACAAHLHELLLS
GQQQQATLSGQGVRPQDVALLVTNFSQANALKEALRQRGIASVYLSDKGSVFETVEAREL
LIVLTAILSNGQEGKLRSALATSLVDWSLLELDTLNHDDVVYEKWVQAFQGYLTLWEQQG
LLPMLRVFMQDVSLAPNMLRHVDGERRLTDFLHLTEKLQEKSLELDSKEGVLRYLRLSIQ
SPNGNSDEQKIRLETDAELVRIVTIHKSKGLEYPIVYLPFALTPYQDREKSALYHDAQQQ
LWIAIDPDEAQTEQHKEELYAAEIRLAYVALTRSKEACFIGCMDVGKKATKSREASLDVH
LSGVGALLAEGEAFAAGDLYPSLLRLCEAHTLKQMKLVDLPSEPSVLPRFEMQQAPLESA
NAREFMGRVERDWWIGSYSSLVVEDKEIRDESLPGLDELVTVEPMDAMSVPLPEAIAELT
VEPQANRFSFPRGAAPGTFLHDLLEGKALLETIDKPSFADLIRTNQQANMAAYYQRNGFQ
DWQSVLTEWLPDILQTELEAGATLATLPVSACRKEMEFFLPVSHMNALQLDALARTHDPL
SKQAPRIQDRPLKGMLKGFIDLLFEWQGRYYVLDYKSNYLGEDFKDYGEEALNHAMLDHR
YDLQYQLYTLALHRLLRQRLPHYDYEHHIGGVVYGFLRGMSPQKETGVFRTRLTLAHVNA
MDALFQGKPIGENDTRGQSTSQEAIQYGLF
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacatcgatcacttacagagtattccggaaacgctcgatgccatgtcgtttcct
ctgtttggcaaacgccttattgaggccagtgcagggacagggaaaacctataccattgcc
aacctgtatctgcgtttattggtgccgacgggtcagccaggggatttggagcagccatta
acggtagatcaaattctggtggtgacctttaccgaagcggccaccgcggaattaaaagcg
cgaattcgagctcgtattcgcggcgcgcgtaaagccttaatattgcagcagagtgacgat
gtttttctgtctcagtggctcagtgtgatgacggcagaacagcaagcggatgcgattgaa
aaactgctttatgctgagaagcaaatggatgaagcagcggtgtttaccattcatggtttt
tgtcagcgcatgctcagtcaaaatgcctttgaaagtcgtatgctgtttcagcaaaccatt
gaaacggatgagcaggcgccacttgcgatggccgtgaaggatgtttggcggcgtgttttt
tatccaatgagtgacagcaaagttgcgttgataaagcccatttggtcgacgccggacgct
ctgctgcgtgatttatatctgttgaataatcagcctgacgccaaaatattggcgtcagat
tatgattgggaagccgccttacaatcggctcagcagcaaatacaaattgttcgtgaaact
tggttagagcagtcacaagatatcattgatgcattagaacacagtggcattaagcgtacc
ttctggcgcaaggaccctgcgaaagatgtatcggccatgcagcagtgggcgacatctgga
cattttgaactggataaatgcttagagaagtttgatgccaatgaacatgcaactcgcatc
agcaaaggaggggaggtgccacagcattctttctttgggctggtggccgaattgcgacaa
gctttccctgaagccggtaaactaaaagcagtgctcttagtatccttgtggcaacaggtg
aaagagcgcatgactgagtggaagcgagccactcaatctctgacctttacggacttgcta
acctccttagatcaggctttgacgcaagatgacagtggcaagttagcgcagcggattcga
cagctttatcctatcgcgcttattgatgaatttcaggatacggatgcggtgcaatatcgt
attttttctgaggtttatcagcctgcaagcaccacgcaggccagtcttggtttgattatg
attggtgaccctaaacaagccatttatgcctttcgcggggctgatatttatacctatctg
gcggccaaaaaacaggtggacgctgtgtattcactggccaccaattaccgttcatccgcc
gccatgattcaatctgtgaacgcgttgtttaccacgcaagactctccgtttcgtgtgtct
gggattccttttgtagcggtacaagaccgaggtgtactggggcaatttcagcgccatggt
gagacacaagcggcattgcagtttttgtatcaagcatcagaagagtcggtctcaccaaag
gattatcgcgagcaaatggccgaagcctgtgccgcccatttgcatgagcttttattgtcg
gggcagcaacaacaagcgacgttgtctggtcaaggtgtgcggcctcaggacgtggctttg
ttggtgacgaatttcagccaagccaatgcgctaaaagaggcccttcgtcaacgtggcatt
gccagcgtgtatttgagtgacaaaggttcggtatttgaaacggttgaggccagagagttg
ttaatcgttttaacggcgattctgtctaacggccaagaaggcaagttgcgttcggcgttg
gcgaccagtttggtggattggtccttgttggaattagacacattgaatcatgatgatgtg
gtgtacgaaaagtgggtacaggctttccaggggtatttaaccttgtgggagcaacagggc
ttattgcccatgctgcgcgtttttatgcaggacgtgagcttagcccccaacatgctgcgt
catgtagacggagaacgacgcctcactgatttcttgcaccttactgaaaagcttcaagaa
aagtccttggaattggattcgaaagaaggtgttttacgctatcttcgtttgtctatccag
tcgccaaatggcaacagtgatgagcaaaaaattcgtctcgaaacagatgctgaactggtg
cgtattgtgactattcacaagagtaaaggtttggaatatcccattgtgtatttgcccttt
gctctgacaccttatcaggatagggaaaagtcagccctttatcatgatgcacagcagcaa
ttgtggattgcgatcgacccagatgaggcgcaaaccgagcaacacaaagaagaattgtat
gctgcagaaattcgattggcctatgtggcattaactcgctctaaagaggcttgttttatt
ggctgtatggacgttggtaaaaaagccactaagagtcgagaagcgtcgttagatgtgcat
ttaagtggtgtgggagcgttattggcagaaggtgaggccttcgctgctggggatttatac
ccaagtctgttgcgattgtgtgaagcgcatacccttaagcaaatgaagcttgtcgactta
ccatcagagccttcggttctacctcgatttgaaatgcagcaagcaccattagaatcagcc
aacgcacgtgagtttatgggaagagtggaacgagactggtggattggcagttattcgtca
ctggtggtggaagacaaagagattcgtgacgaaagcttacctggtttagatgagttagtg
acggttgaaccaatggatgccatgtcagtgcccttacctgaggcgattgctgagttaaca
gtagagccgcaagcgaaccgctttagctttccaagaggcgcggcgcccggaaccttttta
catgatttgctagaagggaaagctctgcttgagacgattgataagcctagctttgcggat
ctgatccgaacgaatcagcaggctaatatggcggcttattatcaacgaaatggctttcag
gattggcagtcggtgttaactgagtggttaccggatattttgcaaacagaattggaggcg
ggagcgaccttggccacactacctgtgtcggcttgtcgcaaagagatggaatttttctta
ccggtaagccatatgaatgcattgcaattggatgcgcttgccagaacccatgaccctttg
tctaaacaagcgccaaggattcaagatcgccccctaaaaggcatgttgaaaggttttatt
gacctattgtttgaatggcaaggtcggtattacgtgttggattataaatccaattatttg
ggggaagactttaaagactacggtgaagaagcattaaatcatgcgatgctggatcatcgt
tatgatttgcaatatcaactttacaccctagctctgcaccggctgctgcggcaacgtttg
cctcactatgattatgagcaccatataggtggtgtggtttatggctttttgcgtggtatg
tcgccacaaaaggaaacgggtgtgttccgtacgcgtttgactctagcgcacgtcaatgcc
atggatgctctgtttcaagggaaacctatcggtgagaatgacacacgtggtcaatcgact
tctcaagaggcaatacagtatggactcttctaa
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