Marinomonas posidonica: Mar181_2924
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Entry
Mar181_2924 CDS
T01508
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mpc
Marinomonas posidonica
Pathway
mpc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mar181_2924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpc03019
]
Mar181_2924
Messenger RNA biogenesis [BR:
mpc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Mar181_2924
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Peptidase_S76
Motif
Other DBs
NCBI-ProteinID:
AEF55953
UniProt:
F6D0S1
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All DBs
Position
complement(3236927..3238279)
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AA seq
450 aa
AA seq
DB search
MRHLVPSPQDLWFLPLGGTGEIGMNMNLYGHDGQWLMVDCGVSFNEPLSPQDALTSEVVS
ADPRFISEQKERLAGMVITHAHEDHIGAVPYLWRRFKCAVYTTRFTAEVLRRKLAQVGLE
QDVPIIIVDDGESKQIGPFQVTWLALTHSMPDAFSVTIETPAGRVFHTGDWKIDKQPVVG
EGFVASRFSALAKQNMLAMVCDSTNALQAGHSVSESDCYQGLLAAIKEEKNRVVVGCFSS
NLARLVSLGRVAQETGRYLALIGRSLLNMVSIARVTGHWPEDLPLIDAAHIGYLPREEVL
AVATGSQGEPRATLNRLAANNCFDLTLEADDLVLFSAMMIPGNENDIMRLVGQFKGQNIR
TLQQQDTNLAIHVSGHPYQDELRQLYSWVQPEVAIPVHGEAAHLAANAEVAKASHVPRQL
VGQNGDLYQLAPNVTVIRQAVKTGRIALLR
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atccgtcatttagtaccatcgccgcaagatttatggtttttaccgttaggtgggacaggt
gaaatcggcatgaacatgaatctttatgggcatgacgggcaatggttgatggtggattgc
ggcgtgtcttttaatgaacctttatcacctcaagatgcgctgacatcggaagtggttagt
gcggatcctcgctttatcagtgaacagaaagagcgcctcgctggcatggtgattacgcat
gctcatgaagaccatatcggggctgtgccttacctatggcggcgctttaaatgtgctgtt
tacacaactcgttttaccgctgaagtattgcgtcgtaaattggctcaagttggcctagaa
caagacgtgccaattatcattgtcgatgatggtgagagcaaacagattggtccgtttcag
gtcacctggctggctttgacccattccatgcctgatgccttctcagtgaccattgagacg
ccagctggacgagtatttcatactggtgattggaaaatcgacaaacaacctgtggttgga
gaaggctttgttgccagtcgctttagtgcgctggccaagcaaaatatgctcgccatggtg
tgcgattcaaccaatgccctgcaagcaggtcattctgtttccgaaagtgactgttatcag
ggcttgttggcagccatcaaagaggaaaaaaatcgcgttgtggtcggctgctttagcagt
aatctggcgcgtttggtgtcgcttggacgagtggcacaagaaaccgggcgttacttggcg
ttaatcggtcgttcacttttgaatatggtgagtatcgctcgtgtcactggccattggcct
gaggatttgcctttaatcgatgccgcgcatattggctatttaccgagagaagaagtgttg
gcggtggcgacaggcagtcaaggtgaaccaagagcaaccttaaaccgtttggccgcgaat
aactgttttgatttgacgctggaggccgatgatctggtgctcttttctgccatgatgatt
cctggcaatgaaaacgacatcatgcgtttggttggtcaatttaaaggacaaaacattcgc
acattacaacagcaggatacgaatctagcgattcatgtgagtggccacccatatcaggat
gaattgcgacaactgtattcttgggtgcagccagaagtcgcgattcctgttcatggggag
gccgcccatttagcggcaaacgcagaggtggcgaaagctagccatgtaccaagacagctg
gttggacaaaatggcgacttgtatcagcttgccccgaatgtcaccgtgatacgccaagcc
gtaaaaacgggccgaattgctttactgcgttaa
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